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Gene : MED21 A. thaliana

Gene ID  ? AT4G04780
Brief Description  mediator 21  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? mediator 21 (MED21); CONTAINS InterPro DOMAIN/s: Mediator complex, subunit Med21 (InterPro:IPR021384).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? Encodes the med21 subunit of the mediator complex which is involved in transcriptional regulation. MED21 interacts physically with the E3 ligase HUB1 and this interaction may be important in mediation defense responses to fungal pathogens.  Source: TAIR, Jun 30, 2015.
Name  ? mediator 21

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0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT4G04780 0.5kb upstream 0.5kb upstream 1884   true Chr4: 2431752-2433635
AT4G04780 0.5kb upstream 0.5kb upstream 500   false Chr4: 2431752-2432251
AT4G04780 0.5kb downstream 0.5kb downstream 1884   true Chr4: 2432252-2434135
AT4G04780 0.5kb downstream 0.5kb downstream 500   false Chr4: 2433636-2434135
AT4G04780 1.0kb upstream 1.0kb upstream 2384   true Chr4: 2431252-2433635
AT4G04780 1.0kb upstream 1.0kb upstream 1000   false Chr4: 2431252-2432251
AT4G04780 1.0kb downstream 1.0kb downstream 2384   true Chr4: 2432252-2434635
AT4G04780 1.0kb downstream 1.0kb downstream 1000   false Chr4: 2433636-2434635
AT4G04780 3.0kb upstream 3.0kb upstream 4384   true Chr4: 2429252-2433635
AT4G04780 3.0kb upstream 3.0kb upstream 3000   false Chr4: 2429252-2432251
AT4G04780 3.0kb downstream 3.0kb downstream 4384   true Chr4: 2432252-2436635
AT4G04780 3.0kb downstream 3.0kb downstream 3000   false Chr4: 2433636-2436635

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0 Pathways

Data Source: KEGG

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10 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from GOC GO annotations assigned by the GO Consortium 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
IntAct interactions data set Curated binary and complex protein-protein interactions for Arabidopsis thaliana 8/02/2016
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139