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Gene : GRXS17 A. thaliana

Gene ID  ? AT4G04950
Brief Description  thioredoxin family protein  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? thioredoxin family protein; FUNCTIONS IN: electron carrier activity, protein disulfide oxidoreductase activity; INVOLVED IN: cell redox homeostasis; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutaredoxin (InterPro:IPR002109), Thioredoxin-like (InterPro:IPR017936), Thioredoxin domain (InterPro:IPR013766), Thioredoxin-like fold (InterPro:IPR012336), Glutaredoxin-related protein (InterPro:IPR004480); BEST Arabidopsis thaliana protein match is: Thioredoxin superfamily protein (TAIR:AT4G32580.1).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? Encodes a monothiol glutaredoxin that is a critical component involved in ROS accumulation, auxin signaling, and temperature-dependent postembryonic growth in plants.  Source: TAIR, Jun 30, 2015.
Name  ? monothiol glutaredoxin 17
  • synonyms:
  • Arabidopsis thaliana monothiol glutaredoxin 17,
  • AtGRXS17

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3 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Annotation PubMed Id
Arabidopsis monothiol glutaredoxin, AtGRXS17, is critical for temperature-dependent postembryonic growth and development via modulating auxin response. 21515673
Ectopic expression of AtGRXS17 from Arabidopsis thaliana in tomato plants minimized photo-oxidation of chlorophyll and reduced oxidative damage of cell membrane systems under heat stress 22762155
A mutant deficient in NF-YC11/NC2alpha exhibited similar phenotypes to grxs17 in response to photoperiod. Therefore, we propose that GRXS17 interacts with NF-YC11/NC2alpha to relay a redox signal generated by the photoperiod to maintain meristem function. 25699589

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT4G04950 0.5kb upstream 0.5kb upstream 2967   true Chr4: 2517596-2520562
AT4G04950 0.5kb upstream 0.5kb upstream 500   false Chr4: 2520063-2520562
AT4G04950 0.5kb downstream 0.5kb downstream 2967   true Chr4: 2517096-2520062
AT4G04950 0.5kb downstream 0.5kb downstream 500   false Chr4: 2517096-2517595
AT4G04950 1.0kb upstream 1.0kb upstream 3467   true Chr4: 2517596-2521062
AT4G04950 1.0kb upstream 1.0kb upstream 1000   false Chr4: 2520063-2521062
AT4G04950 1.0kb downstream 1.0kb downstream 3467   true Chr4: 2516596-2520062
AT4G04950 1.0kb downstream 1.0kb downstream 1000   false Chr4: 2516596-2517595
AT4G04950 3.0kb upstream 3.0kb upstream 5467   true Chr4: 2517596-2523062
AT4G04950 3.0kb upstream 3.0kb upstream 3000   false Chr4: 2520063-2523062
AT4G04950 3.0kb downstream 3.0kb downstream 5467   true Chr4: 2514596-2520062
AT4G04950 3.0kb downstream 3.0kb downstream 3000   false Chr4: 2514596-2517595

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0 Pathways

Data Source: KEGG

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11 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from TAIR GO annotations assigned by TAIR 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
GeneRIF Concise phrase describing gene function and publication associated with NCBI Gene records 8/12/2016
IntAct interactions data set Curated binary and complex protein-protein interactions for Arabidopsis thaliana 8/02/2016
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139