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Gene : AT4G14050 A. thaliana

Gene ID  ? AT4G14050
Brief Description  Pentatricopeptide repeat (PPR) superfamily protein  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? Pentatricopeptide repeat (PPR) superfamily protein; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: leaf; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT1G68930.1).  Source: TAIR, Jun 30, 2015.

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1 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Annotation PubMed Id
Using a target prediction approach, the nuclear gene MEF35 (Mitochondrial Editing Factor 35) was identified as one to be required for RNA editing at three sites in mitochondria of Arabidopsis thaliana. [MEF35] 26470017

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT4G14050 0.5kb upstream 0.5kb upstream 2617   true Chr4: 8103521-8106137
AT4G14050 0.5kb upstream 0.5kb upstream 500   false Chr4: 8105638-8106137
AT4G14050 0.5kb downstream 0.5kb downstream 2617   true Chr4: 8103021-8105637
AT4G14050 0.5kb downstream 0.5kb downstream 500   false Chr4: 8103021-8103520
AT4G14050 1.0kb upstream 1.0kb upstream 3117   true Chr4: 8103521-8106637
AT4G14050 1.0kb upstream 1.0kb upstream 1000   false Chr4: 8105638-8106637
AT4G14050 1.0kb downstream 1.0kb downstream 3117   true Chr4: 8102521-8105637
AT4G14050 1.0kb downstream 1.0kb downstream 1000   false Chr4: 8102521-8103520
AT4G14050 3.0kb upstream 3.0kb upstream 5117   true Chr4: 8103521-8108637
AT4G14050 3.0kb upstream 3.0kb upstream 3000   false Chr4: 8105638-8108637
AT4G14050 3.0kb downstream 3.0kb downstream 5117   true Chr4: 8100521-8105637
AT4G14050 3.0kb downstream 3.0kb downstream 3000   false Chr4: 8100521-8103520

Proteins

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Function

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0 Pathways

Data Source: KEGG

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Expression

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Array Expression

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9 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from UniProt GO annotations assigned by UniProt 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
GeneRIF Concise phrase describing gene function and publication associated with NCBI Gene records 8/12/2016