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Gene : NF-YB3 A. thaliana

Gene ID  ? AT4G14540
Brief Description  nuclear factor Y, subunit B3  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? nuclear factor Y, subunit B3" (NF-YB3); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus, intracellular; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, CBFA/NFYB, DNA topoisomerase (InterPro:IPR003957), Transcription factor CBF/NF-Y/archaeal histone (InterPro:IPR003958), Histone-fold (InterPro:IPR009072), Transcription factor, NFYB/HAP3, conserved site (InterPro:IPR003956); BEST Arabidopsis thaliana protein match is: nuclear factor Y, subunit B2 (TAIR:AT5G47640.1).  Source: TAIR, Jun 30, 2015.
Name  ? nuclear factor Y, subunit B3

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1 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Annotation PubMed Id
The abi4, cbfA and cbp mutants showed weaker drought-tolerance after a herbicide norflurazon treatment, which indicated the physiological role of these key transcription factors. 23832569

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT4G14540 0.5kb upstream 0.5kb upstream 1476   true Chr4: 8343849-8345324
AT4G14540 0.5kb upstream 0.5kb upstream 500   false Chr4: 8343849-8344348
AT4G14540 0.5kb downstream 0.5kb downstream 1476   true Chr4: 8344349-8345824
AT4G14540 0.5kb downstream 0.5kb downstream 500   false Chr4: 8345325-8345824
AT4G14540 1.0kb upstream 1.0kb upstream 1976   true Chr4: 8343349-8345324
AT4G14540 1.0kb upstream 1.0kb upstream 1000   false Chr4: 8343349-8344348
AT4G14540 1.0kb downstream 1.0kb downstream 1976   true Chr4: 8344349-8346324
AT4G14540 1.0kb downstream 1.0kb downstream 1000   false Chr4: 8345325-8346324
AT4G14540 3.0kb upstream 3.0kb upstream 3976   true Chr4: 8341349-8345324
AT4G14540 3.0kb upstream 3.0kb upstream 3000   false Chr4: 8341349-8344348
AT4G14540 3.0kb downstream 3.0kb downstream 3976   true Chr4: 8344349-8348324
AT4G14540 3.0kb downstream 3.0kb downstream 3000   false Chr4: 8345325-8348324

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0 Pathways

Data Source: KEGG

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Expression

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11 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from UniProt GO annotations assigned by UniProt 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
GeneRIF Concise phrase describing gene function and publication associated with NCBI Gene records 8/12/2016
IntAct interactions data set Curated binary and complex protein-protein interactions for Arabidopsis thaliana 8/02/2016
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139