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Gene : TCX2 A. thaliana

Gene ID  ? AT4G14770
Brief Description  TESMIN/TSO1-like CXC 2  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? TESMIN/TSO1-like CXC 2 (TCX2); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Tesmin/TSO1-like, CXC (InterPro:IPR005172); BEST Arabidopsis thaliana protein match is: Tesmin/TSO1-like CXC domain-containing protein (TAIR:AT3G22780.1).  Source: TAIR, Jun 30, 2015.
Name  ? TESMIN/TSO1-like CXC 2
  • synonyms:
  • ATTCX2,
  • TESMIN/TSO1-LIKE CXC 2

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0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT4G14770 0.5kb upstream 0.5kb upstream 4843   true Chr4: 8480634-8485476
AT4G14770 0.5kb upstream 0.5kb upstream 500   false Chr4: 8484977-8485476
AT4G14770 0.5kb downstream 0.5kb downstream 4843   true Chr4: 8480134-8484976
AT4G14770 0.5kb downstream 0.5kb downstream 500   false Chr4: 8480134-8480633
AT4G14770 1.0kb upstream 1.0kb upstream 5343   true Chr4: 8480634-8485976
AT4G14770 1.0kb upstream 1.0kb upstream 1000   false Chr4: 8484977-8485976
AT4G14770 1.0kb downstream 1.0kb downstream 5343   true Chr4: 8479634-8484976
AT4G14770 1.0kb downstream 1.0kb downstream 1000   false Chr4: 8479634-8480633
AT4G14770 3.0kb upstream 3.0kb upstream 7343   true Chr4: 8480634-8487976
AT4G14770 3.0kb upstream 3.0kb upstream 3000   false Chr4: 8484977-8487976
AT4G14770 3.0kb downstream 3.0kb downstream 7343   true Chr4: 8477634-8484976
AT4G14770 3.0kb downstream 3.0kb downstream 3000   false Chr4: 8477634-8480633

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0 Pathways

Data Source: KEGG

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8 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from UniProt GO annotations assigned by UniProt 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0