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Gene : AT4G14905 A. thaliana

Gene ID  ? AT4G14905
Brief Description  Galactose oxidase/kelch repeat superfamily protein  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? Galactose oxidase/kelch repeat superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: Galactose oxidase/kelch repeat superfamily protein (TAIR:AT4G39240.1).  Source: TAIR, Jun 30, 2015.

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0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT4G14905 0.5kb upstream 0.5kb upstream 2200   true Chr4: 8526311-8528510
AT4G14905 0.5kb upstream 0.5kb upstream 500   false Chr4: 8528011-8528510
AT4G14905 0.5kb downstream 0.5kb downstream 2200   true Chr4: 8525811-8528010
AT4G14905 0.5kb downstream 0.5kb downstream 500   false Chr4: 8525811-8526310
AT4G14905 1.0kb upstream 1.0kb upstream 2700   true Chr4: 8526311-8529010
AT4G14905 1.0kb upstream 1.0kb upstream 1000   false Chr4: 8528011-8529010
AT4G14905 1.0kb downstream 1.0kb downstream 2700   true Chr4: 8525311-8528010
AT4G14905 1.0kb downstream 1.0kb downstream 1000   false Chr4: 8525311-8526310
AT4G14905 3.0kb upstream 3.0kb upstream 4700   true Chr4: 8526311-8531010
AT4G14905 3.0kb upstream 3.0kb upstream 3000   false Chr4: 8528011-8531010
AT4G14905 3.0kb downstream 3.0kb downstream 4700   true Chr4: 8523311-8528010
AT4G14905 3.0kb downstream 3.0kb downstream 3000   false Chr4: 8523311-8526310

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0 Pathways

Data Source: KEGG

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8 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from TIGR GO annotations assigned by TIGR Arabidopsis annotation effort 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0