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Gene : G2484-1 A. thaliana

Gene ID  ? AT4G17330
Brief Description  G2484-1 protein  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? G2484-1 protein (G2484-1); FUNCTIONS IN: RNA binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Agenet (InterPro:IPR008395), Tudor-like, plant (InterPro:IPR014002); BEST Arabidopsis thaliana protein match is: agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein (TAIR:AT1G68580.2).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? gene of unknown function expressed in seedlings, flower buds and stems  Source: TAIR, Jun 30, 2015.
Name  ? G2484-1 protein
  • synonyms:
  • ATG2484-1,
  • G2484-1 protein

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0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT4G17330 0.5kb upstream 0.5kb upstream 9356   true Chr4: 9688851-9698206
AT4G17330 0.5kb upstream 0.5kb upstream 500   false Chr4: 9697707-9698206
AT4G17330 0.5kb downstream 0.5kb downstream 9356   true Chr4: 9688351-9697706
AT4G17330 0.5kb downstream 0.5kb downstream 500   false Chr4: 9688351-9688850
AT4G17330 1.0kb upstream 1.0kb upstream 9856   true Chr4: 9688851-9698706
AT4G17330 1.0kb upstream 1.0kb upstream 1000   false Chr4: 9697707-9698706
AT4G17330 1.0kb downstream 1.0kb downstream 9856   true Chr4: 9687851-9697706
AT4G17330 1.0kb downstream 1.0kb downstream 1000   false Chr4: 9687851-9688850
AT4G17330 3.0kb upstream 3.0kb upstream 11856   true Chr4: 9688851-9700706
AT4G17330 3.0kb upstream 3.0kb upstream 3000   false Chr4: 9697707-9700706
AT4G17330 3.0kb downstream 3.0kb downstream 11856   true Chr4: 9685851-9697706
AT4G17330 3.0kb downstream 3.0kb downstream 3000   false Chr4: 9685851-9688850

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0 Pathways

Data Source: KEGG

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Expression

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Array Expression

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9 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from TAIR GO annotations assigned by TAIR 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
TrEMBL data set Computationally analysed records, enriched with automatic annotation 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139