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Gene : ERF-1 A. thaliana

Gene ID  ? AT4G17500
Brief Description  ethylene responsive element binding factor 1  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? ethylene responsive element binding factor 1 (ERF-1); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: ethylene responsive element binding factor 2 (TAIR:AT5G47220.1).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? Encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family (ATERF-1). The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5.  Source: TAIR, Jun 30, 2015.
Name  ? ethylene responsive element binding factor 1
  • synonyms:
  • AtERF#100,
  • ERF1A,
  • ethylene responsive element binding factor 1,
  • ATERF-1

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2 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Annotation PubMed Id
Mutual regulation of APETALA2 and ethylene-responsive element binding protein in A. thaliana is described and discussed. 17204538
AtERF1 domains bind to a target DNA motif with a universal CG step core recognition and different flanking bases preference 19878300

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT4G17500 0.5kb upstream 0.5kb upstream 1689   true Chr4: 9758703-9760391
AT4G17500 0.5kb upstream 0.5kb upstream 500   false Chr4: 9758703-9759202
AT4G17500 0.5kb downstream 0.5kb downstream 1689   true Chr4: 9759203-9760891
AT4G17500 0.5kb downstream 0.5kb downstream 500   false Chr4: 9760392-9760891
AT4G17500 1.0kb upstream 1.0kb upstream 2189   true Chr4: 9758203-9760391
AT4G17500 1.0kb upstream 1.0kb upstream 1000   false Chr4: 9758203-9759202
AT4G17500 1.0kb downstream 1.0kb downstream 2189   true Chr4: 9759203-9761391
AT4G17500 1.0kb downstream 1.0kb downstream 1000   false Chr4: 9760392-9761391
AT4G17500 3.0kb upstream 3.0kb upstream 4189   true Chr4: 9756203-9760391
AT4G17500 3.0kb upstream 3.0kb upstream 3000   false Chr4: 9756203-9759202
AT4G17500 3.0kb downstream 3.0kb downstream 4189   true Chr4: 9759203-9763391
AT4G17500 3.0kb downstream 3.0kb downstream 3000   false Chr4: 9760392-9763391

Proteins

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0 Pathways

Data Source: KEGG

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Expression

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10 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from UniProt GO annotations assigned by UniProt 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
GeneRIF Concise phrase describing gene function and publication associated with NCBI Gene records 8/12/2016
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139