help  | faq  | software  | ARAPORT

Gene : WRKY28 A. thaliana

Gene ID  ? AT4G18170
Brief Description  WRKY DNA-binding protein 28  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? WRKY DNA-binding protein 28 (WRKY28); CONTAINS InterPro DOMAIN/s: DNA-binding WRKY (InterPro:IPR003657), Transcription factor, WRKY group IIc (InterPro:IPR017396); BEST Arabidopsis thaliana protein match is: WRKY DNA-binding protein 8 (TAIR:AT5G46350.1).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? member of WRKY Transcription Factor; Group II-c. Involved in the activation of salicylic acid biosynthesis genes ICS1 and PBS3.  Source: TAIR, Jun 30, 2015.
Name  ? WRKY DNA-binding protein 28
  • synonyms:
  • ATWRKY28

Locus History Displayer

Publication Counts Displayer

3 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Annotation PubMed Id
WRKY28 specifically binds to the ICS1 promoter in vivo, most probably to one or both binding sites at position -460 and -445 upstream of the transcription start site. 21595875
A few genes having either WRKY or bHLH cis elements in their promoter regions showed higher transcript levels than wild type. 22948308
Transgenic lines overexpressing AtWRKY28 and AtWRKY75 showed enhanced resistance to oxalic acid and S. sclerotiorum, demonstrating that both AtWRKY28 and AtWRKY75 are novel positive regulators in Arabidopsis defense responses. 23749099

Genomics

Sequence Feature Displayer

Gene Structure Displayer

J Browse Displayer

Overlapping Features Displayer

12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT4G18170 0.5kb upstream 0.5kb upstream 2180   true Chr4: 10060714-10062893
AT4G18170 0.5kb upstream 0.5kb upstream 500   false Chr4: 10060714-10061213
AT4G18170 0.5kb downstream 0.5kb downstream 2180   true Chr4: 10061214-10063393
AT4G18170 0.5kb downstream 0.5kb downstream 500   false Chr4: 10062894-10063393
AT4G18170 1.0kb upstream 1.0kb upstream 2680   true Chr4: 10060214-10062893
AT4G18170 1.0kb upstream 1.0kb upstream 1000   false Chr4: 10060214-10061213
AT4G18170 1.0kb downstream 1.0kb downstream 2680   true Chr4: 10061214-10063893
AT4G18170 1.0kb downstream 1.0kb downstream 1000   false Chr4: 10062894-10063893
AT4G18170 3.0kb upstream 3.0kb upstream 4680   true Chr4: 10058214-10062893
AT4G18170 3.0kb upstream 3.0kb upstream 3000   false Chr4: 10058214-10061213
AT4G18170 3.0kb downstream 3.0kb downstream 4680   true Chr4: 10061214-10065893
AT4G18170 3.0kb downstream 3.0kb downstream 3000   false Chr4: 10062894-10065893

Proteins

Protein Displayer


Function

Gene Ontology Displayer

0 Pathways

Data Source: KEGG

Gene --> Ontology term

Gene --> Pathways


Expression

Plant Ontology Displayer

Bar Efp Browser Displayer

Array Expression

RNA-seq Expression

Co-expression

Save / Export

 

 

 

 



Interactions

Cytoscape Network Displayer


Homology

Homologue Displayer

Phytomine Ortholog Displayer


Stocks

Alelle Table Displayer

Stock Gene Table Displayer


 

Other

10 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from TAIR GO annotations assigned by TAIR 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
GeneRIF Concise phrase describing gene function and publication associated with NCBI Gene records 8/12/2016
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139