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Gene : ABCE2 A. thaliana

Gene ID  ? AT4G19210
Brief Description  RNAse l inhibitor protein 2  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? RNAse l inhibitor protein 2 (RLI2); FUNCTIONS IN: transporter activity; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ABC transporter-like (InterPro:IPR003439), 4Fe-4S binding domain (InterPro:IPR001450), ATPase, AAA type, core (InterPro:IPR003593), 4Fe-4S ferredoxin, iron-sulpur binding domain (InterPro:IPR017896), 4Fe-4S ferredoxin, iron-sulphur binding, conserved site (InterPro:IPR017900), RNase L inhibitor RLI, possible metal-binding domain (InterPro:IPR007209), ABC transporter, ABCE (InterPro:IPR013283), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: RNAse l inhibitor protein 1 (TAIR:AT3G13640.1).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? member of RLI subfamily  Source: TAIR, Jun 30, 2015.
Name  ? ATP-binding cassette E2
  • synonyms:
  • ARABIDOPSIS THALIANA RNASE L INHIBITOR PROTEIN 2,
  • RNAse l inhibitor protein 2,
  • RLI2,
  • ATRLI2

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1 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Annotation PubMed Id
AtRLI2 acts as an endogenous suppressor of RNA silencing. [AtRLI2] 16786298

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT4G19210 0.5kb upstream 0.5kb upstream 4595   true Chr4: 10500623-10505217
AT4G19210 0.5kb upstream 0.5kb upstream 500   false Chr4: 10500623-10501122
AT4G19210 0.5kb downstream 0.5kb downstream 4595   true Chr4: 10501123-10505717
AT4G19210 0.5kb downstream 0.5kb downstream 500   false Chr4: 10505218-10505717
AT4G19210 1.0kb upstream 1.0kb upstream 5095   true Chr4: 10500123-10505217
AT4G19210 1.0kb upstream 1.0kb upstream 1000   false Chr4: 10500123-10501122
AT4G19210 1.0kb downstream 1.0kb downstream 5095   true Chr4: 10501123-10506217
AT4G19210 1.0kb downstream 1.0kb downstream 1000   false Chr4: 10505218-10506217
AT4G19210 3.0kb upstream 3.0kb upstream 7095   true Chr4: 10498123-10505217
AT4G19210 3.0kb upstream 3.0kb upstream 3000   false Chr4: 10498123-10501122
AT4G19210 3.0kb downstream 3.0kb downstream 7095   true Chr4: 10501123-10508217
AT4G19210 3.0kb downstream 3.0kb downstream 3000   false Chr4: 10505218-10508217

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0 Pathways

Data Source: KEGG

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Expression

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Interactions

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11 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from GOC GO annotations assigned by the GO Consortium 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
GeneRIF Concise phrase describing gene function and publication associated with NCBI Gene records 8/12/2016
IntAct interactions data set Curated binary and complex protein-protein interactions for Arabidopsis thaliana 8/02/2016
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139