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Gene : ATDOF4.2 A. thaliana

Gene ID  ? AT4G21030
Brief Description  Dof-type zinc finger domain-containing protein  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? ATDOF4.2; CONTAINS InterPro DOMAIN/s: Zinc finger, Dof-type (InterPro:IPR003851); BEST Arabidopsis thaliana protein match is: Dof-type zinc finger domain-containing protein (TAIR:AT4G21050.1).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? Encodes a nuclear protein that can bind DNA in a sequence specific manner and is involved in seed coat development and shoot branching. It has been shown to activate transcription of a target gene, AtEXPA9.  Source: TAIR, Jun 30, 2015.

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1 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Annotation PubMed Id
Data indicate that AtDOF4.2-overexpressing increased branching through the up-regulation of three branching-related genes, AtSTM (SHOOT MERISTEMLESS), AtTFL1 (TERMINAL FLOWER1) and AtCYP83B1 (CYTOCHROME P450 83B1). 23095045


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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT4G21030 0.5kb upstream 0.5kb upstream 1085   true Chr4: 11230914-11231998
AT4G21030 0.5kb upstream 0.5kb upstream 500   false Chr4: 11230914-11231413
AT4G21030 0.5kb downstream 0.5kb downstream 1085   true Chr4: 11231414-11232498
AT4G21030 0.5kb downstream 0.5kb downstream 500   false Chr4: 11231999-11232498
AT4G21030 1.0kb upstream 1.0kb upstream 1585   true Chr4: 11230414-11231998
AT4G21030 1.0kb upstream 1.0kb upstream 1000   false Chr4: 11230414-11231413
AT4G21030 1.0kb downstream 1.0kb downstream 1585   true Chr4: 11231414-11232998
AT4G21030 1.0kb downstream 1.0kb downstream 1000   false Chr4: 11231999-11232998
AT4G21030 3.0kb upstream 3.0kb upstream 3585   true Chr4: 11228414-11231998
AT4G21030 3.0kb upstream 3.0kb upstream 3000   false Chr4: 11228414-11231413
AT4G21030 3.0kb downstream 3.0kb downstream 3585   true Chr4: 11231414-11234998
AT4G21030 3.0kb downstream 3.0kb downstream 3000   false Chr4: 11231999-11234998


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0 Pathways

Data Source: KEGG

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9 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from TIGR GO annotations assigned by TIGR Arabidopsis annotation effort 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
GeneRIF Concise phrase describing gene function and publication associated with NCBI Gene records 8/12/2016