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Gene : MYB102 A. thaliana

Gene ID  ? AT4G21440
Brief Description  MYB-like 102  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? MYB-like 102 (MYB102); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 74 (TAIR:AT4G05100.1).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? Encodes a MYB transcription factor involved in wounding and osmotic stress response. Member of the R2R3 factor gene family.  Source: TAIR, Jun 30, 2015.
Name  ? MYB-like 102
  • synonyms:
  • ATM4,
  • A. THALIANA MYB 4,
  • MYB-like 102,
  • ATMYB102

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0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT4G21440 0.5kb upstream 0.5kb upstream 2071   true Chr4: 11418199-11420269
AT4G21440 0.5kb upstream 0.5kb upstream 500   false Chr4: 11419770-11420269
AT4G21440 0.5kb downstream 0.5kb downstream 2071   true Chr4: 11417699-11419769
AT4G21440 0.5kb downstream 0.5kb downstream 500   false Chr4: 11417699-11418198
AT4G21440 1.0kb upstream 1.0kb upstream 2571   true Chr4: 11418199-11420769
AT4G21440 1.0kb upstream 1.0kb upstream 1000   false Chr4: 11419770-11420769
AT4G21440 1.0kb downstream 1.0kb downstream 2571   true Chr4: 11417199-11419769
AT4G21440 1.0kb downstream 1.0kb downstream 1000   false Chr4: 11417199-11418198
AT4G21440 3.0kb upstream 3.0kb upstream 4571   true Chr4: 11418199-11422769
AT4G21440 3.0kb upstream 3.0kb upstream 3000   false Chr4: 11419770-11422769
AT4G21440 3.0kb downstream 3.0kb downstream 4571   true Chr4: 11415199-11419769
AT4G21440 3.0kb downstream 3.0kb downstream 3000   false Chr4: 11415199-11418198

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Data Source: KEGG

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9 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from GOC GO annotations assigned by the GO Consortium 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
TrEMBL data set Computationally analysed records, enriched with automatic annotation 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139