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Gene : MSRB2 A. thaliana

Gene ID  ? AT4G21860
Brief Description  methionine sulfoxide reductase B 2  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? methionine sulfoxide reductase B 2 (MSRB2); FUNCTIONS IN: peptide-methionine-(S)-S-oxide reductase activity; INVOLVED IN: oxidation reduction; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Methionine sulphoxide reductase B (InterPro:IPR002579), Mss4-like (InterPro:IPR011057); BEST Arabidopsis thaliana protein match is: methionine sulfoxide reductase B3 (TAIR:AT4G04800.1).  Source: TAIR, Jun 30, 2015.
Name  ? methionine sulfoxide reductase B 2

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1 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Annotation PubMed Id
Data suggest that plastidial MSRBs fulfil an essential function in maintaining vegetative growth of plants during environmental constraints, through a role in the preservation of photosynthetic antennae. 19874542

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT4G21860 0.5kb upstream 0.5kb upstream 2580   true Chr4: 11599645-11602224
AT4G21860 0.5kb upstream 0.5kb upstream 500   false Chr4: 11601725-11602224
AT4G21860 0.5kb downstream 0.5kb downstream 2580   true Chr4: 11599145-11601724
AT4G21860 0.5kb downstream 0.5kb downstream 500   false Chr4: 11599145-11599644
AT4G21860 1.0kb upstream 1.0kb upstream 3080   true Chr4: 11599645-11602724
AT4G21860 1.0kb upstream 1.0kb upstream 1000   false Chr4: 11601725-11602724
AT4G21860 1.0kb downstream 1.0kb downstream 3080   true Chr4: 11598645-11601724
AT4G21860 1.0kb downstream 1.0kb downstream 1000   false Chr4: 11598645-11599644
AT4G21860 3.0kb upstream 3.0kb upstream 5080   true Chr4: 11599645-11604724
AT4G21860 3.0kb upstream 3.0kb upstream 3000   false Chr4: 11601725-11604724
AT4G21860 3.0kb downstream 3.0kb downstream 5080   true Chr4: 11596645-11601724
AT4G21860 3.0kb downstream 3.0kb downstream 3000   false Chr4: 11596645-11599644

Proteins

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Function

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0 Pathways

Data Source: KEGG

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Expression

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Array Expression

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Interactions

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Homology

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Stocks

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11 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from TAIR GO annotations assigned by TAIR 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
GeneRIF Concise phrase describing gene function and publication associated with NCBI Gene records 8/12/2016
IntAct interactions data set Curated binary and complex protein-protein interactions for Arabidopsis thaliana 8/02/2016
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139