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Gene : AT4G24060 A. thaliana

Gene ID  ? AT4G24060
Brief Description  Dof-type zinc finger DNA-binding family protein  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? Dof-type zinc finger DNA-binding family protein; CONTAINS InterPro DOMAIN/s: Zinc finger, Dof-type (InterPro:IPR003851); BEST Arabidopsis thaliana protein match is: Dof-type zinc finger DNA-binding family protein (TAIR:AT1G64620.1).  Source: TAIR, Jun 30, 2015.

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1 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Annotation PubMed Id
Data show that the expression of 3 DOF genes DOF2.1 (At2g28510), DOF4.6 (At4g24060) and DOF5.3 (At5g60200) is activated at early vascular development stages overlapping onset of ATHB8 expression. 20563990

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT4G24060 0.5kb upstream 0.5kb upstream 2603   true Chr4: 12503172-12505774
AT4G24060 0.5kb upstream 0.5kb upstream 500   false Chr4: 12503172-12503671
AT4G24060 0.5kb downstream 0.5kb downstream 2603   true Chr4: 12503672-12506274
AT4G24060 0.5kb downstream 0.5kb downstream 500   false Chr4: 12505775-12506274
AT4G24060 1.0kb upstream 1.0kb upstream 3103   true Chr4: 12502672-12505774
AT4G24060 1.0kb upstream 1.0kb upstream 1000   false Chr4: 12502672-12503671
AT4G24060 1.0kb downstream 1.0kb downstream 3103   true Chr4: 12503672-12506774
AT4G24060 1.0kb downstream 1.0kb downstream 1000   false Chr4: 12505775-12506774
AT4G24060 3.0kb upstream 3.0kb upstream 5103   true Chr4: 12500672-12505774
AT4G24060 3.0kb upstream 3.0kb upstream 3000   false Chr4: 12500672-12503671
AT4G24060 3.0kb downstream 3.0kb downstream 5103   true Chr4: 12503672-12508774
AT4G24060 3.0kb downstream 3.0kb downstream 3000   false Chr4: 12505775-12508774

Proteins

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Function

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0 Pathways

Data Source: KEGG

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Expression

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Array Expression

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9 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from UniProt GO annotations assigned by UniProt 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
GeneRIF Concise phrase describing gene function and publication associated with NCBI Gene records 8/12/2016