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Gene : AT4G24100 A. thaliana

Gene ID  ? AT4G24100
Brief Description  Protein kinase superfamily protein  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? Protein kinase superfamily protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT4G10730.1).  Source: TAIR, Jun 30, 2015.

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0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT4G24100 0.5kb upstream 0.5kb upstream 5480   true Chr4: 12514399-12519878
AT4G24100 0.5kb upstream 0.5kb upstream 500   false Chr4: 12514399-12514898
AT4G24100 0.5kb downstream 0.5kb downstream 5480   true Chr4: 12514899-12520378
AT4G24100 0.5kb downstream 0.5kb downstream 500   false Chr4: 12519879-12520378
AT4G24100 1.0kb upstream 1.0kb upstream 5980   true Chr4: 12513899-12519878
AT4G24100 1.0kb upstream 1.0kb upstream 1000   false Chr4: 12513899-12514898
AT4G24100 1.0kb downstream 1.0kb downstream 5980   true Chr4: 12514899-12520878
AT4G24100 1.0kb downstream 1.0kb downstream 1000   false Chr4: 12519879-12520878
AT4G24100 3.0kb upstream 3.0kb upstream 7980   true Chr4: 12511899-12519878
AT4G24100 3.0kb upstream 3.0kb upstream 3000   false Chr4: 12511899-12514898
AT4G24100 3.0kb downstream 3.0kb downstream 7980   true Chr4: 12514899-12522878
AT4G24100 3.0kb downstream 3.0kb downstream 3000   false Chr4: 12519879-12522878

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0 Pathways

Data Source: KEGG

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Expression

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10 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from UniProt GO annotations assigned by UniProt 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
TrEMBL data set Computationally analysed records, enriched with automatic annotation 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
IntAct interactions data set Curated binary and complex protein-protein interactions for Arabidopsis thaliana 8/02/2016
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139