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Gene : AT4G25890 A. thaliana

Gene ID  ? AT4G25890
Brief Description  60S acidic ribosomal protein family  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? 60S acidic ribosomal protein family; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translational elongation; LOCATED IN: cytosolic ribosome, ribosome, nucleus, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein 60S (InterPro:IPR001813); BEST Arabidopsis thaliana protein match is: 60S acidic ribosomal protein family (TAIR:AT5G57290.3).  Source: TAIR, Jun 30, 2015.

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0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT4G25890 0.5kb upstream 0.5kb upstream 1685   true Chr4: 13159381-13161065
AT4G25890 0.5kb upstream 0.5kb upstream 500   false Chr4: 13160566-13161065
AT4G25890 0.5kb downstream 0.5kb downstream 1685   true Chr4: 13158881-13160565
AT4G25890 0.5kb downstream 0.5kb downstream 500   false Chr4: 13158881-13159380
AT4G25890 1.0kb upstream 1.0kb upstream 2185   true Chr4: 13159381-13161565
AT4G25890 1.0kb upstream 1.0kb upstream 1000   false Chr4: 13160566-13161565
AT4G25890 1.0kb downstream 1.0kb downstream 2185   true Chr4: 13158381-13160565
AT4G25890 1.0kb downstream 1.0kb downstream 1000   false Chr4: 13158381-13159380
AT4G25890 3.0kb upstream 3.0kb upstream 4185   true Chr4: 13159381-13163565
AT4G25890 3.0kb upstream 3.0kb upstream 3000   false Chr4: 13160566-13163565
AT4G25890 3.0kb downstream 3.0kb downstream 4185   true Chr4: 13156381-13160565
AT4G25890 3.0kb downstream 3.0kb downstream 3000   false Chr4: 13156381-13159380

Proteins

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Function

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1 Pathways

Data Source: KEGG

Identifier Name
03010 Ribosome

Gene --> Ontology term

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Expression

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8 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from TIGR GO annotations assigned by TIGR Arabidopsis annotation effort 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
KEGG pathways data set Wiring diagrams of molecular interactions, reactions, and relations 79.0