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Gene : FIM1 A. thaliana

Gene ID  ? AT4G26700
Brief Description  fimbrin 1  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? fimbrin 1 (FIM1); FUNCTIONS IN: actin binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Actinin-type, actin-binding, conserved site (InterPro:IPR001589), Calponin-homology (InterPro:IPR016146), Calponin-like actin-binding (InterPro:IPR001715); BEST Arabidopsis thaliana protein match is: Actin binding Calponin homology (CH) domain-containing protein (TAIR:AT5G55400.1).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? fimbrin-like protein  Source: TAIR, Jun 30, 2015.
Name  ? fimbrin 1
  • synonyms:
  • ATFIM1,
  • ARABIDOPSIS THALIANA FIMBRIN 1

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2 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Annotation PubMed Id
Bound to GFP to label actin networks in multiple cell types in Nicotiana, Medicago, and Lycopersicon. 15557099
To improve fluorescence for enhanced in vivo F-actin imaging, transgenic Arabidopsis plants were generated expressing a construct with green fluorescent protein fused to both the C- and N-termini of the actin binding domain. 18028299

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT4G26700 0.5kb upstream 0.5kb upstream 5008   true Chr4: 13462597-13467604
AT4G26700 0.5kb upstream 0.5kb upstream 500   false Chr4: 13462597-13463096
AT4G26700 0.5kb downstream 0.5kb downstream 5008   true Chr4: 13463097-13468104
AT4G26700 0.5kb downstream 0.5kb downstream 500   false Chr4: 13467605-13468104
AT4G26700 1.0kb upstream 1.0kb upstream 5508   true Chr4: 13462097-13467604
AT4G26700 1.0kb upstream 1.0kb upstream 1000   false Chr4: 13462097-13463096
AT4G26700 1.0kb downstream 1.0kb downstream 5508   true Chr4: 13463097-13468604
AT4G26700 1.0kb downstream 1.0kb downstream 1000   false Chr4: 13467605-13468604
AT4G26700 3.0kb upstream 3.0kb upstream 7508   true Chr4: 13460097-13467604
AT4G26700 3.0kb upstream 3.0kb upstream 3000   false Chr4: 13460097-13463096
AT4G26700 3.0kb downstream 3.0kb downstream 7508   true Chr4: 13463097-13470604
AT4G26700 3.0kb downstream 3.0kb downstream 3000   false Chr4: 13467605-13470604

Proteins

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Function

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0 Pathways

Data Source: KEGG

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Expression

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Array Expression

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Interactions

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Homology

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Stocks

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10 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from UniProt GO annotations assigned by UniProt 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
GeneRIF Concise phrase describing gene function and publication associated with NCBI Gene records 8/12/2016
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139