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Gene : AT4G29570 A. thaliana

Gene ID  ? AT4G29570
Brief Description  Cytidine/deoxycytidylate deaminase family protein  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? Cytidine/deoxycytidylate deaminase family protein; FUNCTIONS IN: hydrolase activity, cytidine deaminase activity, catalytic activity, zinc ion binding; INVOLVED IN: cytidine deamination, cytidine metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: stamen; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Cytidine deaminase, homodimeric (InterPro:IPR006263), APOBEC/CMP deaminase, zinc-binding (InterPro:IPR016192), CMP/dCMP deaminase, zinc-binding (InterPro:IPR002125), Cytidine deaminase-like (InterPro:IPR016193), Cytidine/deoxycytidylate deaminase, zinc-binding domain (InterPro:IPR013171); BEST Arabidopsis thaliana protein match is: Cytidine/deoxycytidylate deaminase family protein (TAIR:AT4G29580.2).  Source: TAIR, Jun 30, 2015.

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0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT4G29570 0.5kb upstream 0.5kb upstream 1636   true Chr4: 14506847-14508482
AT4G29570 0.5kb upstream 0.5kb upstream 500   false Chr4: 14506847-14507346
AT4G29570 0.5kb downstream 0.5kb downstream 1636   true Chr4: 14507347-14508982
AT4G29570 0.5kb downstream 0.5kb downstream 500   false Chr4: 14508483-14508982
AT4G29570 1.0kb upstream 1.0kb upstream 2136   true Chr4: 14506347-14508482
AT4G29570 1.0kb upstream 1.0kb upstream 1000   false Chr4: 14506347-14507346
AT4G29570 1.0kb downstream 1.0kb downstream 2136   true Chr4: 14507347-14509482
AT4G29570 1.0kb downstream 1.0kb downstream 1000   false Chr4: 14508483-14509482
AT4G29570 3.0kb upstream 3.0kb upstream 4136   true Chr4: 14504347-14508482
AT4G29570 3.0kb upstream 3.0kb upstream 3000   false Chr4: 14504347-14507346
AT4G29570 3.0kb downstream 3.0kb downstream 4136   true Chr4: 14507347-14511482
AT4G29570 3.0kb downstream 3.0kb downstream 3000   false Chr4: 14508483-14511482

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0 Pathways

Data Source: KEGG

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7 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0