help  | faq  | software  | ARAPORT

Gene : AME3 A. thaliana

Gene ID  ? AT4G32660
Brief Description  Protein kinase superfamily protein  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? AME3; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: FUS3-complementing gene 1 (TAIR:AT3G53570.4).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? Encodes protein kinase AME3.  Source: TAIR, Jun 30, 2015.

Locus History Displayer

Publication Counts Displayer

0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Genomics

Sequence Feature Displayer

Gene Structure Displayer

J Browse Displayer

Overlapping Features Displayer

12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT4G32660 0.5kb upstream 0.5kb upstream 3797   true Chr4: 15755518-15759314
AT4G32660 0.5kb upstream 0.5kb upstream 500   false Chr4: 15755518-15756017
AT4G32660 0.5kb downstream 0.5kb downstream 3797   true Chr4: 15756018-15759814
AT4G32660 0.5kb downstream 0.5kb downstream 500   false Chr4: 15759315-15759814
AT4G32660 1.0kb upstream 1.0kb upstream 4297   true Chr4: 15755018-15759314
AT4G32660 1.0kb upstream 1.0kb upstream 1000   false Chr4: 15755018-15756017
AT4G32660 1.0kb downstream 1.0kb downstream 4297   true Chr4: 15756018-15760314
AT4G32660 1.0kb downstream 1.0kb downstream 1000   false Chr4: 15759315-15760314
AT4G32660 3.0kb upstream 3.0kb upstream 6297   true Chr4: 15753018-15759314
AT4G32660 3.0kb upstream 3.0kb upstream 3000   false Chr4: 15753018-15756017
AT4G32660 3.0kb downstream 3.0kb downstream 6297   true Chr4: 15756018-15762314
AT4G32660 3.0kb downstream 3.0kb downstream 3000   false Chr4: 15759315-15762314

Proteins

Protein Displayer


Function

Gene Ontology Displayer

0 Pathways

Data Source: KEGG

Gene --> Ontology term

Gene --> Pathways


Expression

Plant Ontology Displayer

Bar Efp Browser Displayer

Array Expression

RNA-seq Expression

Co-expression

Save / Export

 

 

 

 



Interactions

Cytoscape Network Displayer


Homology

Homologue Displayer

Phytomine Ortholog Displayer


Stocks

Alelle Table Displayer

Stock Gene Table Displayer


 

Other

10 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from InterPro    
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
IntAct interactions data set Curated binary and complex protein-protein interactions for Arabidopsis thaliana 8/02/2016
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139