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Gene : AT4G32760 A. thaliana

Gene ID  ? AT4G32760
Brief Description  ENTH/VHS/GAT family protein  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? ENTH/VHS/GAT family protein; FUNCTIONS IN: protein transporter activity; INVOLVED IN: intracellular protein transport, intra-Golgi vesicle-mediated transport; LOCATED IN: Golgi stack, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: VHS (InterPro:IPR002014), GAT (InterPro:IPR004152), VHS subgroup (InterPro:IPR018205), ENTH/VHS (InterPro:IPR008942); BEST Arabidopsis thaliana protein match is: ENTH/VHS/GAT family protein (TAIR:AT3G08790.1).  Source: TAIR, Jun 30, 2015.

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0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT4G32760 0.5kb upstream 0.5kb upstream 5623   true Chr4: 15798577-15804199
AT4G32760 0.5kb upstream 0.5kb upstream 500   false Chr4: 15798577-15799076
AT4G32760 0.5kb downstream 0.5kb downstream 5623   true Chr4: 15799077-15804699
AT4G32760 0.5kb downstream 0.5kb downstream 500   false Chr4: 15804200-15804699
AT4G32760 1.0kb upstream 1.0kb upstream 6123   true Chr4: 15798077-15804199
AT4G32760 1.0kb upstream 1.0kb upstream 1000   false Chr4: 15798077-15799076
AT4G32760 1.0kb downstream 1.0kb downstream 6123   true Chr4: 15799077-15805199
AT4G32760 1.0kb downstream 1.0kb downstream 1000   false Chr4: 15804200-15805199
AT4G32760 3.0kb upstream 3.0kb upstream 8123   true Chr4: 15796077-15804199
AT4G32760 3.0kb upstream 3.0kb upstream 3000   false Chr4: 15796077-15799076
AT4G32760 3.0kb downstream 3.0kb downstream 8123   true Chr4: 15799077-15807199
AT4G32760 3.0kb downstream 3.0kb downstream 3000   false Chr4: 15804200-15807199

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0 Pathways

Data Source: KEGG

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Expression

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10 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from InterPro    
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
TrEMBL data set Computationally analysed records, enriched with automatic annotation 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
IntAct interactions data set Curated binary and complex protein-protein interactions for Arabidopsis thaliana 8/02/2016
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139