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Gene : SQD1 A. thaliana

Gene ID  ? AT4G33030
Brief Description  sulfoquinovosyldiacylglycerol 1  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? sulfoquinovosyldiacylglycerol 1 (SQD1); FUNCTIONS IN: UDPsulfoquinovose synthase activity, sulfotransferase activity, zinc ion binding; INVOLVED IN: cellular response to phosphate starvation, sulfolipid biosynthetic process, glycolipid biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? involved in sulfolipid biosynthesis  Source: TAIR, Jun 30, 2015.
Name  ? sulfoquinovosyldiacylglycerol 1

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0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT4G33030 0.5kb upstream 0.5kb upstream 2961   true Chr4: 15934873-15937833
AT4G33030 0.5kb upstream 0.5kb upstream 500   false Chr4: 15934873-15935372
AT4G33030 0.5kb downstream 0.5kb downstream 2961   true Chr4: 15935373-15938333
AT4G33030 0.5kb downstream 0.5kb downstream 500   false Chr4: 15937834-15938333
AT4G33030 1.0kb upstream 1.0kb upstream 3461   true Chr4: 15934373-15937833
AT4G33030 1.0kb upstream 1.0kb upstream 1000   false Chr4: 15934373-15935372
AT4G33030 1.0kb downstream 1.0kb downstream 3461   true Chr4: 15935373-15938833
AT4G33030 1.0kb downstream 1.0kb downstream 1000   false Chr4: 15937834-15938833
AT4G33030 3.0kb upstream 3.0kb upstream 5461   true Chr4: 15932373-15937833
AT4G33030 3.0kb upstream 3.0kb upstream 3000   false Chr4: 15932373-15935372
AT4G33030 3.0kb downstream 3.0kb downstream 5461   true Chr4: 15935373-15940833
AT4G33030 3.0kb downstream 3.0kb downstream 3000   false Chr4: 15937834-15940833

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2 Pathways

Data Source: KEGG

Identifier Name
00520 Amino sugar and nucleotide sugar metabolism
00561 Glycerolipid metabolism

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Expression

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11 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from TAIR GO annotations assigned by TAIR 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
KEGG pathways data set Wiring diagrams of molecular interactions, reactions, and relations 79.0
IntAct interactions data set Curated binary and complex protein-protein interactions for Arabidopsis thaliana 8/02/2016
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139