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Gene : EMB2758 A. thaliana

Gene ID  ? AT4G33990
Brief Description  Tetratricopeptide repeat (TPR)-like superfamily protein  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? embryo defective 2758 (EMB2758); INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: mitochondrion; EXPRESSED IN: shoot apex, embryo; EXPRESSED DURING: D bilateral stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT4G30700.1).  Source: TAIR, Jun 30, 2015.
Name  ? embryo defective 2758

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0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT4G33990 0.5kb upstream 0.5kb upstream 3794   true Chr4: 16289623-16293416
AT4G33990 0.5kb upstream 0.5kb upstream 500   false Chr4: 16292917-16293416
AT4G33990 0.5kb downstream 0.5kb downstream 3794   true Chr4: 16289123-16292916
AT4G33990 0.5kb downstream 0.5kb downstream 500   false Chr4: 16289123-16289622
AT4G33990 1.0kb upstream 1.0kb upstream 4294   true Chr4: 16289623-16293916
AT4G33990 1.0kb upstream 1.0kb upstream 1000   false Chr4: 16292917-16293916
AT4G33990 1.0kb downstream 1.0kb downstream 4294   true Chr4: 16288623-16292916
AT4G33990 1.0kb downstream 1.0kb downstream 1000   false Chr4: 16288623-16289622
AT4G33990 3.0kb upstream 3.0kb upstream 6294   true Chr4: 16289623-16295916
AT4G33990 3.0kb upstream 3.0kb upstream 3000   false Chr4: 16292917-16295916
AT4G33990 3.0kb downstream 3.0kb downstream 6294   true Chr4: 16286623-16292916
AT4G33990 3.0kb downstream 3.0kb downstream 3000   false Chr4: 16286623-16289622

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0 Pathways

Data Source: KEGG

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8 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from TAIR GO annotations assigned by TAIR 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0