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Gene : GBF6 A. thaliana

Gene ID  ? AT4G34590
Brief Description  G-box binding factor 6  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? G-box binding factor 6 (GBF6); FUNCTIONS IN: DNA binding, protein heterodimerization activity, sequence-specific DNA binding transcription factor activity; INVOLVED IN: sucrose induced translational repression, negative regulation of translation, regulation of transcription, DNA-dependent, response to sucrose stimulus; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), bZIP transcription factor, bZIP-1 (InterPro:IPR011616); BEST Arabidopsis thaliana protein match is: basic leucine-zipper 44 (TAIR:AT1G75390.1).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? Encodes a basic domain leucine zipper (bZip) transcription factor bZIP11. Translation is repressed by sucrose. Directly regulates gene expression of ASN1 and ProDH2, which are enzyme-coding genes involved in amino acid metabolism.  Source: TAIR, Jun 30, 2015.
Name  ? G-box binding factor 6
  • synonyms:
  • ATB2,
  • Arabidopsis thaliana basic leucine-zipper 11,
  • BZIP11,
  • AtbZIP11

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4 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Annotation PubMed Id
bZIP11 target processes are identified using transiently increased nuclear bZIP11 levels and genome-wide expression analysis; the effect of bZIP11 on ASN1 and GBF6 are reported. 18088315
The uORF2 element in the bZip11 mRNA encodes a sucrose control peptide that inhibits bZIP11 translation in response to high sucrose levels by stalling the ribosome on the mRNA. 19403731
The bZIP11 induction leads to reduced contents of the prominent growth regulatory molecule trehalose 6-phosphate (T6P). The metabolic changes detected mimic in part those observed in carbon-starved plants. 21534971
Arabidopsis bZIP11-related basic leucine zipper (bZIP) transcription factors interact via an amino-terminal activation domain with ADA2b adapter proteins to recruit the histone acetylation machinery to specific auxin-responsive genes. 24861440

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT4G34590 0.5kb upstream 0.5kb upstream 1870   true Chr4: 16521361-16523230
AT4G34590 0.5kb upstream 0.5kb upstream 500   false Chr4: 16521361-16521860
AT4G34590 0.5kb downstream 0.5kb downstream 1870   true Chr4: 16521861-16523730
AT4G34590 0.5kb downstream 0.5kb downstream 500   false Chr4: 16523231-16523730
AT4G34590 1.0kb upstream 1.0kb upstream 2370   true Chr4: 16520861-16523230
AT4G34590 1.0kb upstream 1.0kb upstream 1000   false Chr4: 16520861-16521860
AT4G34590 1.0kb downstream 1.0kb downstream 2370   true Chr4: 16521861-16524230
AT4G34590 1.0kb downstream 1.0kb downstream 1000   false Chr4: 16523231-16524230
AT4G34590 3.0kb upstream 3.0kb upstream 4370   true Chr4: 16518861-16523230
AT4G34590 3.0kb upstream 3.0kb upstream 3000   false Chr4: 16518861-16521860
AT4G34590 3.0kb downstream 3.0kb downstream 4370   true Chr4: 16521861-16526230
AT4G34590 3.0kb downstream 3.0kb downstream 3000   false Chr4: 16523231-16526230

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0 Pathways

Data Source: KEGG

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11 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from TIGR GO annotations assigned by TIGR Arabidopsis annotation effort 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
GeneRIF Concise phrase describing gene function and publication associated with NCBI Gene records 8/12/2016
IntAct interactions data set Curated binary and complex protein-protein interactions for Arabidopsis thaliana 8/02/2016
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139