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Gene : PIRL4 A. thaliana

Gene ID  ? AT4G35470
Brief Description  plant intracellular ras group-related LRR 4  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? plant intracellular ras group-related LRR 4 (PIRL4); INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, typical subtype (InterPro:IPR003591), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: plant intracellular ras group-related LRR 5 (TAIR:AT2G17440.1).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? Encodes PIRL4, a member of the Plant Intracellular Ras-group-related LRRs (Leucine rich repeat proteins). PIRLs are a distinct, plant-specific class of intracellular LRRs that likely mediate protein interactions, possibly in the context of signal transduction.  Source: TAIR, Jun 30, 2015.
Name  ? plant intracellular ras group-related LRR 4

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0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT4G35470 0.5kb upstream 0.5kb upstream 3546   true Chr4: 16845638-16849183
AT4G35470 0.5kb upstream 0.5kb upstream 500   false Chr4: 16845638-16846137
AT4G35470 0.5kb downstream 0.5kb downstream 3546   true Chr4: 16846138-16849683
AT4G35470 0.5kb downstream 0.5kb downstream 500   false Chr4: 16849184-16849683
AT4G35470 1.0kb upstream 1.0kb upstream 4046   true Chr4: 16845138-16849183
AT4G35470 1.0kb upstream 1.0kb upstream 1000   false Chr4: 16845138-16846137
AT4G35470 1.0kb downstream 1.0kb downstream 4046   true Chr4: 16846138-16850183
AT4G35470 1.0kb downstream 1.0kb downstream 1000   false Chr4: 16849184-16850183
AT4G35470 3.0kb upstream 3.0kb upstream 6046   true Chr4: 16843138-16849183
AT4G35470 3.0kb upstream 3.0kb upstream 3000   false Chr4: 16843138-16846137
AT4G35470 3.0kb downstream 3.0kb downstream 6046   true Chr4: 16846138-16852183
AT4G35470 3.0kb downstream 3.0kb downstream 3000   false Chr4: 16849184-16852183

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10 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from TAIR GO annotations assigned by TAIR 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
IntAct interactions data set Curated binary and complex protein-protein interactions for Arabidopsis thaliana 8/02/2016
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139