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Gene : AT5G01160 A. thaliana

Gene ID  ? AT5G01160
Brief Description  RING/U-box superfamily protein  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C2H2-type (InterPro:IPR007087).  Source: TAIR, Jun 30, 2015.

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0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT5G01160 0.5kb upstream 0.5kb upstream 2697   true Chr5: 53356-56052
AT5G01160 0.5kb upstream 0.5kb upstream 500   false Chr5: 53356-53855
AT5G01160 0.5kb downstream 0.5kb downstream 2697   true Chr5: 53856-56552
AT5G01160 0.5kb downstream 0.5kb downstream 500   false Chr5: 56053-56552
AT5G01160 1.0kb upstream 1.0kb upstream 3197   true Chr5: 52856-56052
AT5G01160 1.0kb upstream 1.0kb upstream 1000   false Chr5: 52856-53855
AT5G01160 1.0kb downstream 1.0kb downstream 3197   true Chr5: 53856-57052
AT5G01160 1.0kb downstream 1.0kb downstream 1000   false Chr5: 56053-57052
AT5G01160 3.0kb upstream 3.0kb upstream 5197   true Chr5: 50856-56052
AT5G01160 3.0kb upstream 3.0kb upstream 3000   false Chr5: 50856-53855
AT5G01160 3.0kb downstream 3.0kb downstream 5197   true Chr5: 53856-59052
AT5G01160 3.0kb downstream 3.0kb downstream 3000   false Chr5: 56053-59052

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0 Pathways

Data Source: KEGG

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8 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from TAIR GO annotations assigned by TAIR 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
TrEMBL data set Computationally analysed records, enriched with automatic annotation 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0