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Gene : EMB175 A. thaliana

Gene ID  ? AT5G03800
Brief Description  Pentatricopeptide repeat (PPR) superfamily protein  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? EMBRYO DEFECTIVE 175 (EMB175); FUNCTIONS IN: catalytic activity; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: chloroplast, membrane; EXPRESSED IN: root, flower, leaf; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G49170.1).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? Encodes a protein with a large central domain of 14 internal pentatricopeptide motifs (some degenerate) arranged in tandem. Mutations in this locus result in embryo lethality.  Source: TAIR, Jun 30, 2015.
Name  ? EMBRYO DEFECTIVE 175
  • synonyms:
  • embryo defective 1899,
  • EMB166,
  • EMB1899,
  • EMBRYO DEFECTIVE 166

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0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT5G03800 0.5kb upstream 0.5kb upstream 3413   true Chr5: 1010766-1014178
AT5G03800 0.5kb upstream 0.5kb upstream 500   false Chr5: 1013679-1014178
AT5G03800 0.5kb downstream 0.5kb downstream 3413   true Chr5: 1010266-1013678
AT5G03800 0.5kb downstream 0.5kb downstream 500   false Chr5: 1010266-1010765
AT5G03800 1.0kb upstream 1.0kb upstream 3913   true Chr5: 1010766-1014678
AT5G03800 1.0kb upstream 1.0kb upstream 1000   false Chr5: 1013679-1014678
AT5G03800 1.0kb downstream 1.0kb downstream 3913   true Chr5: 1009766-1013678
AT5G03800 1.0kb downstream 1.0kb downstream 1000   false Chr5: 1009766-1010765
AT5G03800 3.0kb upstream 3.0kb upstream 5913   true Chr5: 1010766-1016678
AT5G03800 3.0kb upstream 3.0kb upstream 3000   false Chr5: 1013679-1016678
AT5G03800 3.0kb downstream 3.0kb downstream 5913   true Chr5: 1007766-1013678
AT5G03800 3.0kb downstream 3.0kb downstream 3000   false Chr5: 1007766-1010765

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Data Source: KEGG

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8 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from TIGR GO annotations assigned by TIGR Arabidopsis annotation effort 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0