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Gene : LDA A. thaliana

Gene ID  ? AT5G04360
Brief Description  limit dextrinase  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? limit dextrinase (LDA); FUNCTIONS IN: limit dextrinase activity, pullulanase activity, alpha-amylase activity; INVOLVED IN: starch biosynthetic process, carbohydrate metabolic process, starch catabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Alpha-1,6-glucosidases, pullulanase-type (InterPro:IPR011839), Immunoglobulin E-set (InterPro:IPR014756), Glycoside hydrolase, family 13, N-terminal (InterPro:IPR004193), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781), Glycosyl hydrolase, family 13, catalytic domain (InterPro:IPR006047); BEST Arabidopsis thaliana protein match is: isoamylase 3 (TAIR:AT4G09020.1).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? Encodes an enzyme thought to be involved in the hydrolysis of the α-1,6 linkages during starch degradation in seed endosperm. However, a knockout mutant of Arabidopsis lacking limit dextrinase has normal rates of starch degradation in the leaf at night, indicating that more than one isoamylases might be involved in this process.  Source: TAIR, Jun 30, 2015.
Name  ? limit dextrinase
  • synonyms:
  • limit dextrinase,
  • ATLDA,
  • PU1,
  • ATPU1,

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0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI


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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT5G04360 0.5kb upstream 0.5kb upstream 7894   true Chr5: 1220948-1228841
AT5G04360 0.5kb upstream 0.5kb upstream 500   false Chr5: 1220948-1221447
AT5G04360 0.5kb downstream 0.5kb downstream 7894   true Chr5: 1221448-1229341
AT5G04360 0.5kb downstream 0.5kb downstream 500   false Chr5: 1228842-1229341
AT5G04360 1.0kb upstream 1.0kb upstream 8394   true Chr5: 1220448-1228841
AT5G04360 1.0kb upstream 1.0kb upstream 1000   false Chr5: 1220448-1221447
AT5G04360 1.0kb downstream 1.0kb downstream 8394   true Chr5: 1221448-1229841
AT5G04360 1.0kb downstream 1.0kb downstream 1000   false Chr5: 1228842-1229841
AT5G04360 3.0kb upstream 3.0kb upstream 10394   true Chr5: 1218448-1228841
AT5G04360 3.0kb upstream 3.0kb upstream 3000   false Chr5: 1218448-1221447
AT5G04360 3.0kb downstream 3.0kb downstream 10394   true Chr5: 1221448-1231841
AT5G04360 3.0kb downstream 3.0kb downstream 3000   false Chr5: 1228842-1231841


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7 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from TIGR GO annotations assigned by TIGR Arabidopsis annotation effort 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07