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Gene : SIR A. thaliana

Gene ID  ? AT5G04590
Brief Description  sulfite reductase  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? sulfite reductase (SIR); FUNCTIONS IN: sulfite reductase activity, sulfite reductase (ferredoxin) activity, copper ion binding; INVOLVED IN: sulfate reduction, response to salt stress, response to cold; LOCATED IN: in 7 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Sulphite reductase, ferredoxin dependent (InterPro:IPR011787), Nitrite/sulphite reductase iron-sulphur/siroheam-binding site (InterPro:IPR006066), Nitrite/sulphite reductase 4Fe-4S domain (InterPro:IPR006067), Nitrite/sulphite reductase, hemoprotein beta-component, ferrodoxin-like (InterPro:IPR005117); BEST Arabidopsis thaliana protein match is: nitrite reductase 1 (TAIR:AT2G15620.1).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? A.thaliana gene encoding sulfite reductase.  Source: TAIR, Jun 30, 2015.
Name  ? sulfite reductase

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2 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Annotation PubMed Id
SiR is essential for normal growth. Downregulation causes severe adaptive reactions of primary and secondary metabolism. 20424176
Data indicate a rapid up-regulation of sulfite reductase (SiR) transcript and activity within 30 min of sulfite injection into Arabidopsis and tomato leaves. 23221833


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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT5G04590 0.5kb upstream 0.5kb upstream 4791   true Chr5: 1318574-1323364
AT5G04590 0.5kb upstream 0.5kb upstream 500   false Chr5: 1318574-1319073
AT5G04590 0.5kb downstream 0.5kb downstream 4791   true Chr5: 1319074-1323864
AT5G04590 0.5kb downstream 0.5kb downstream 500   false Chr5: 1323365-1323864
AT5G04590 1.0kb upstream 1.0kb upstream 5291   true Chr5: 1318074-1323364
AT5G04590 1.0kb upstream 1.0kb upstream 1000   false Chr5: 1318074-1319073
AT5G04590 1.0kb downstream 1.0kb downstream 5291   true Chr5: 1319074-1324364
AT5G04590 1.0kb downstream 1.0kb downstream 1000   false Chr5: 1323365-1324364
AT5G04590 3.0kb upstream 3.0kb upstream 7291   true Chr5: 1316074-1323364
AT5G04590 3.0kb upstream 3.0kb upstream 3000   false Chr5: 1316074-1319073
AT5G04590 3.0kb downstream 3.0kb downstream 7291   true Chr5: 1319074-1326364
AT5G04590 3.0kb downstream 3.0kb downstream 3000   false Chr5: 1323365-1326364


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2 Pathways

Data Source: KEGG

Identifier Name
01100 Metabolic pathways
00920 Sulfur metabolism

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11 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from TAIR GO annotations assigned by TAIR 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
KEGG pathways data set Wiring diagrams of molecular interactions, reactions, and relations 79.0
GeneRIF Concise phrase describing gene function and publication associated with NCBI Gene records 8/12/2016
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139