help  | faq  | software  | ARAPORT

Gene : OFP13 A. thaliana

Gene ID  ? AT5G04820
Brief Description  ovate family protein 13  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? ovate family protein 13 (OFP13); INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF623 (InterPro:IPR006458); BEST Arabidopsis thaliana protein match is: ovate family protein 15 (TAIR:AT2G36050.1).  Source: TAIR, Jun 30, 2015.
Name  ? ovate family protein 13
  • synonyms:
  • ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 13,
  • ATOFP13

Locus History Displayer

Publication Counts Displayer

0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Genomics

Sequence Feature Displayer

Gene Structure Displayer

J Browse Displayer

Overlapping Features Displayer

12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT5G04820 0.5kb upstream 0.5kb upstream 1890   true Chr5: 1398895-1400784
AT5G04820 0.5kb upstream 0.5kb upstream 500   false Chr5: 1398895-1399394
AT5G04820 0.5kb downstream 0.5kb downstream 1890   true Chr5: 1399395-1401284
AT5G04820 0.5kb downstream 0.5kb downstream 500   false Chr5: 1400785-1401284
AT5G04820 1.0kb upstream 1.0kb upstream 2390   true Chr5: 1398395-1400784
AT5G04820 1.0kb upstream 1.0kb upstream 1000   false Chr5: 1398395-1399394
AT5G04820 1.0kb downstream 1.0kb downstream 2390   true Chr5: 1399395-1401784
AT5G04820 1.0kb downstream 1.0kb downstream 1000   false Chr5: 1400785-1401784
AT5G04820 3.0kb upstream 3.0kb upstream 4390   true Chr5: 1396395-1400784
AT5G04820 3.0kb upstream 3.0kb upstream 3000   false Chr5: 1396395-1399394
AT5G04820 3.0kb downstream 3.0kb downstream 4390   true Chr5: 1399395-1403784
AT5G04820 3.0kb downstream 3.0kb downstream 3000   false Chr5: 1400785-1403784

Proteins

Protein Displayer


Function

Gene Ontology Displayer

0 Pathways

Data Source: KEGG

Gene --> Ontology term

Gene --> Pathways


Expression

Plant Ontology Displayer

Bar Efp Browser Displayer

Array Expression

RNA-seq Expression

Co-expression

Save / Export

 

 

 

 



Interactions

Cytoscape Network Displayer


Homology

Homologue Displayer

Phytomine Ortholog Displayer


Stocks

Alelle Table Displayer

Stock Gene Table Displayer


 

Other

8 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from UniProt GO annotations assigned by UniProt 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0