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Gene : SYP31 A. thaliana

Gene ID  ? AT5G05760
Brief Description  syntaxin of plants 31  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? syntaxin of plants 31 (SYP31); CONTAINS InterPro DOMAIN/s: Target SNARE coiled-coil domain (InterPro:IPR000727), t-SNARE (InterPro:IPR010989), Syntaxin/epimorphin, conserved site (InterPro:IPR006012), Syntaxin, N-terminal (InterPro:IPR006011); BEST Arabidopsis thaliana protein match is: syntaxin of plants 32 (TAIR:AT3G24350.1).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? A SNARE protein (ortholog of syntaxin 5), a membrane fusion machine component involved in cytokinesis  Source: TAIR, Jun 30, 2015.
Name  ? syntaxin of plants 31
  • synonyms:
  • ATSYP31,
  • T-SNARE SED 5,
  • ATSED5,
  • SED5

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2 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Annotation PubMed Id
Evidence for SNARE-mediated traffic of the K(+) channel and a role in its distribution within subdomains of the plasma membrane. 16531497
A novel and transplantable di-acidic motif facilitates Endoplasmic Reticulum export of SYP31. 19516076

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT5G05760 0.5kb upstream 0.5kb upstream 2698   true Chr5: 1728893-1731590
AT5G05760 0.5kb upstream 0.5kb upstream 500   false Chr5: 1731091-1731590
AT5G05760 0.5kb downstream 0.5kb downstream 2698   true Chr5: 1728393-1731090
AT5G05760 0.5kb downstream 0.5kb downstream 500   false Chr5: 1728393-1728892
AT5G05760 1.0kb upstream 1.0kb upstream 3198   true Chr5: 1728893-1732090
AT5G05760 1.0kb upstream 1.0kb upstream 1000   false Chr5: 1731091-1732090
AT5G05760 1.0kb downstream 1.0kb downstream 3198   true Chr5: 1727893-1731090
AT5G05760 1.0kb downstream 1.0kb downstream 1000   false Chr5: 1727893-1728892
AT5G05760 3.0kb upstream 3.0kb upstream 5198   true Chr5: 1728893-1734090
AT5G05760 3.0kb upstream 3.0kb upstream 3000   false Chr5: 1731091-1734090
AT5G05760 3.0kb downstream 3.0kb downstream 5198   true Chr5: 1725893-1731090
AT5G05760 3.0kb downstream 3.0kb downstream 3000   false Chr5: 1725893-1728892

Proteins

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Function

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1 Pathways

Data Source: KEGG

Identifier Name
04130 SNARE interactions in vesicular transport

Gene --> Ontology term

Gene --> Pathways


Expression

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Array Expression

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Interactions

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Homology

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Stocks

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Other

12 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from GOC GO annotations assigned by the GO Consortium 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
KEGG pathways data set Wiring diagrams of molecular interactions, reactions, and relations 79.0
GeneRIF Concise phrase describing gene function and publication associated with NCBI Gene records 8/12/2016
IntAct interactions data set Curated binary and complex protein-protein interactions for Arabidopsis thaliana 8/02/2016
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139