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Gene : AT5G08420 A. thaliana

Gene ID  ? AT5G08420
Brief Description  RNA-binding KH domain-containing protein  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? RNA-binding KH domain-containing protein; FUNCTIONS IN: RNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: K Homology (InterPro:IPR004087).  Source: TAIR, Jun 30, 2015.

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0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT5G08420 0.5kb upstream 0.5kb upstream 3482   true Chr5: 2712847-2716328
AT5G08420 0.5kb upstream 0.5kb upstream 500   false Chr5: 2712847-2713346
AT5G08420 0.5kb downstream 0.5kb downstream 3482   true Chr5: 2713347-2716828
AT5G08420 0.5kb downstream 0.5kb downstream 500   false Chr5: 2716329-2716828
AT5G08420 1.0kb upstream 1.0kb upstream 3982   true Chr5: 2712347-2716328
AT5G08420 1.0kb upstream 1.0kb upstream 1000   false Chr5: 2712347-2713346
AT5G08420 1.0kb downstream 1.0kb downstream 3982   true Chr5: 2713347-2717328
AT5G08420 1.0kb downstream 1.0kb downstream 1000   false Chr5: 2716329-2717328
AT5G08420 3.0kb upstream 3.0kb upstream 5982   true Chr5: 2710347-2716328
AT5G08420 3.0kb upstream 3.0kb upstream 3000   false Chr5: 2710347-2713346
AT5G08420 3.0kb downstream 3.0kb downstream 5982   true Chr5: 2713347-2719328
AT5G08420 3.0kb downstream 3.0kb downstream 3000   false Chr5: 2716329-2719328

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0 Pathways

Data Source: KEGG

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Expression

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8 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from UniProt GO annotations assigned by UniProt 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
TrEMBL data set Computationally analysed records, enriched with automatic annotation 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0