help  | faq  | software  | ARAPORT

Gene : MEF7 A. thaliana

Gene ID  ? AT5G09950
Brief Description  Tetratricopeptide repeat (TPR)-like superfamily protein  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G16480.1).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? Encodes a DYW-class PPR protein required for RNA editing at four sites in mitochondria of A. thaliana.  Source: TAIR, Jun 30, 2015.
Name  ? mitochondrial editing factor 7

Locus History Displayer

Publication Counts Displayer

1 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Annotation PubMed Id
Identification of the DYW PPR protein MEF7 as novel specific RNA editing factor which is required for editing of four sites in four different mRNAs in mitochondria of Arabidopsis thaliana. [MEF7] 22258224

Genomics

Sequence Feature Displayer

Gene Structure Displayer

J Browse Displayer

Overlapping Features Displayer

12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT5G09950 0.5kb upstream 0.5kb upstream 4256   true Chr5: 3102195-3106450
AT5G09950 0.5kb upstream 0.5kb upstream 500   false Chr5: 3105951-3106450
AT5G09950 0.5kb downstream 0.5kb downstream 4256   true Chr5: 3101695-3105950
AT5G09950 0.5kb downstream 0.5kb downstream 500   false Chr5: 3101695-3102194
AT5G09950 1.0kb upstream 1.0kb upstream 4756   true Chr5: 3102195-3106950
AT5G09950 1.0kb upstream 1.0kb upstream 1000   false Chr5: 3105951-3106950
AT5G09950 1.0kb downstream 1.0kb downstream 4756   true Chr5: 3101195-3105950
AT5G09950 1.0kb downstream 1.0kb downstream 1000   false Chr5: 3101195-3102194
AT5G09950 3.0kb upstream 3.0kb upstream 6756   true Chr5: 3102195-3108950
AT5G09950 3.0kb upstream 3.0kb upstream 3000   false Chr5: 3105951-3108950
AT5G09950 3.0kb downstream 3.0kb downstream 6756   true Chr5: 3099195-3105950
AT5G09950 3.0kb downstream 3.0kb downstream 3000   false Chr5: 3099195-3102194

Proteins

Protein Displayer


Function

Gene Ontology Displayer

0 Pathways

Data Source: KEGG

Gene --> Ontology term

Gene --> Pathways


Expression

Plant Ontology Displayer

Bar Efp Browser Displayer

Array Expression

RNA-seq Expression

Co-expression

Save / Export

 

 

 

 



Interactions

Cytoscape Network Displayer


Homology

Homologue Displayer

Phytomine Ortholog Displayer


Stocks

Alelle Table Displayer

Stock Gene Table Displayer


 

Other

9 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from TAIR GO annotations assigned by TAIR 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
GeneRIF Concise phrase describing gene function and publication associated with NCBI Gene records 8/12/2016