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Gene : MYB3R-4 A. thaliana

Gene ID  ? AT5G11510
Brief Description  myb domain protein 3r-4  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? myb domain protein 3r-4 (MYB3R-4); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: Homeodomain-like protein (TAIR:AT4G32730.2).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? Arabidopsis thaliana putative c-myb-like transcription factor MYB3R-4. Functions in powdery mildew induced host endoreduplication at the site of infection.  Source: TAIR, Jun 30, 2015.
Name  ? myb domain protein 3r-4
  • synonyms:
  • myb domain protein 3R4,
  • AtMYB3R4

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2 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Annotation PubMed Id
Our results suggest that a pair of structurally related myb3r1 myb3r4 transcription factors may positively regulate cytokinesis mainly through transcriptional activation of the KN gene. 17287251
MYB3R1 and MYB3R4 may have diverse roles during plant development by regulating G2/M-specific genes with various functions as well as genes possibly unrelated to the cell cycle. 21862669

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT5G11510 0.5kb upstream 0.5kb upstream 5637   true Chr5: 3679248-3684884
AT5G11510 0.5kb upstream 0.5kb upstream 500   false Chr5: 3679248-3679747
AT5G11510 0.5kb downstream 0.5kb downstream 5637   true Chr5: 3679748-3685384
AT5G11510 0.5kb downstream 0.5kb downstream 500   false Chr5: 3684885-3685384
AT5G11510 1.0kb upstream 1.0kb upstream 6137   true Chr5: 3678748-3684884
AT5G11510 1.0kb upstream 1.0kb upstream 1000   false Chr5: 3678748-3679747
AT5G11510 1.0kb downstream 1.0kb downstream 6137   true Chr5: 3679748-3685884
AT5G11510 1.0kb downstream 1.0kb downstream 1000   false Chr5: 3684885-3685884
AT5G11510 3.0kb upstream 3.0kb upstream 8137   true Chr5: 3676748-3684884
AT5G11510 3.0kb upstream 3.0kb upstream 3000   false Chr5: 3676748-3679747
AT5G11510 3.0kb downstream 3.0kb downstream 8137   true Chr5: 3679748-3687884
AT5G11510 3.0kb downstream 3.0kb downstream 3000   false Chr5: 3684885-3687884

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0 Pathways

Data Source: KEGG

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Expression

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9 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from GOC GO annotations assigned by the GO Consortium 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
TrEMBL data set Computationally analysed records, enriched with automatic annotation 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
GeneRIF Concise phrase describing gene function and publication associated with NCBI Gene records 8/12/2016