help  | faq  | software  | ARAPORT

Gene : ABO1 A. thaliana

Gene ID  ? AT5G13680
Brief Description  IKI3 family protein  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? ABA-OVERLY SENSITIVE 1 (ABO1); CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), IKI3 (InterPro:IPR006849).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? A subunit of Elongator, a histone acetyl transferase complex, consisting of six subunits (ELP1–ELP6), that copurifies with the elongating RNAPII in yeast and humans. Three Arabidopsis thaliana genes, encoding homologs of the yeast Elongator subunits ELP1, ELP3 (histone acetyl transferase), and ELP4 are responsible for the narrow leaf phenotype in elongata mutants and for reduced root growth that results from a decreased cell division rate. Mutants have no ncm5U (5-carbamoylmethyluridine).  Source: TAIR, Jun 30, 2015.
Name  ? ABA-OVERLY SENSITIVE 1
  • synonyms:
  • ELONGATA 2,
  • ELO2,
  • AtELP1

Locus History Displayer

Publication Counts Displayer

2 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Annotation PubMed Id
Elongator is important for plants to respond to ABA and drought exposure and that ABO1/ELO2 may play a vital role in ABA signal transduction pathways.[ABO1] 16943431
show that the Elongator (elo1, elo2, and elo3) complex was purified from plant cell cultures as a six-component complex. 20080602

Genomics

Sequence Feature Displayer

Gene Structure Displayer

J Browse Displayer

Overlapping Features Displayer

12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT5G13680 0.5kb upstream 0.5kb upstream 5809   true Chr5: 4410314-4416122
AT5G13680 0.5kb upstream 0.5kb upstream 500   false Chr5: 4415623-4416122
AT5G13680 0.5kb downstream 0.5kb downstream 5809   true Chr5: 4409814-4415622
AT5G13680 0.5kb downstream 0.5kb downstream 500   false Chr5: 4409814-4410313
AT5G13680 1.0kb upstream 1.0kb upstream 6309   true Chr5: 4410314-4416622
AT5G13680 1.0kb upstream 1.0kb upstream 1000   false Chr5: 4415623-4416622
AT5G13680 1.0kb downstream 1.0kb downstream 6309   true Chr5: 4409314-4415622
AT5G13680 1.0kb downstream 1.0kb downstream 1000   false Chr5: 4409314-4410313
AT5G13680 3.0kb upstream 3.0kb upstream 8309   true Chr5: 4410314-4418622
AT5G13680 3.0kb upstream 3.0kb upstream 3000   false Chr5: 4415623-4418622
AT5G13680 3.0kb downstream 3.0kb downstream 8309   true Chr5: 4407314-4415622
AT5G13680 3.0kb downstream 3.0kb downstream 3000   false Chr5: 4407314-4410313

Proteins

Protein Displayer


Function

Gene Ontology Displayer

0 Pathways

Data Source: KEGG

Gene --> Ontology term

Gene --> Pathways


Expression

Plant Ontology Displayer

Bar Efp Browser Displayer

Array Expression

RNA-seq Expression

Co-expression

Save / Export

 

 

 

 



Interactions

Cytoscape Network Displayer


Homology

Homologue Displayer

Phytomine Ortholog Displayer


Stocks

Alelle Table Displayer

Stock Gene Table Displayer


 

Other

9 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from InterPro    
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
GeneRIF Concise phrase describing gene function and publication associated with NCBI Gene records 8/12/2016