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Gene : AT5G14050 A. thaliana

Gene ID  ? AT5G14050
Brief Description  Transducin/WD40 repeat-like superfamily protein  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? Transducin/WD40 repeat-like superfamily protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat, conserved site (InterPro:IPR019775), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: TBP-associated factor 5 (TAIR:AT5G25150.1).  Source: TAIR, Jun 30, 2015.

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0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT5G14050 0.5kb upstream 0.5kb upstream 2697   true Chr5: 4532631-4535327
AT5G14050 0.5kb upstream 0.5kb upstream 500   false Chr5: 4532631-4533130
AT5G14050 0.5kb downstream 0.5kb downstream 2697   true Chr5: 4533131-4535827
AT5G14050 0.5kb downstream 0.5kb downstream 500   false Chr5: 4535328-4535827
AT5G14050 1.0kb upstream 1.0kb upstream 3197   true Chr5: 4532131-4535327
AT5G14050 1.0kb upstream 1.0kb upstream 1000   false Chr5: 4532131-4533130
AT5G14050 1.0kb downstream 1.0kb downstream 3197   true Chr5: 4533131-4536327
AT5G14050 1.0kb downstream 1.0kb downstream 1000   false Chr5: 4535328-4536327
AT5G14050 3.0kb upstream 3.0kb upstream 5197   true Chr5: 4530131-4535327
AT5G14050 3.0kb upstream 3.0kb upstream 3000   false Chr5: 4530131-4533130
AT5G14050 3.0kb downstream 3.0kb downstream 5197   true Chr5: 4533131-4538327
AT5G14050 3.0kb downstream 3.0kb downstream 3000   false Chr5: 4535328-4538327

Proteins

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1 Pathways

Data Source: KEGG

Identifier Name
03008 Ribosome biogenesis in eukaryotes

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Expression

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11 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from TIGR GO annotations assigned by TIGR Arabidopsis annotation effort 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
KEGG pathways data set Wiring diagrams of molecular interactions, reactions, and relations 79.0
IntAct interactions data set Curated binary and complex protein-protein interactions for Arabidopsis thaliana 8/02/2016
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139