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Gene : HB-3 A. thaliana

Gene ID  ? AT5G15150
Brief Description  homeobox 3  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? homeobox 3 (HB-3); FUNCTIONS IN: sequence-specific DNA binding, DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), Helix-turn-helix motif, lambda-like repressor (InterPro:IPR000047), Homeodomain-like (InterPro:IPR009057), Leucine zipper, homeobox-associated (InterPro:IPR003106), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: homeobox protein 20 (TAIR:AT3G01220.1).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? homeobox-containing gene with an unusual feature: a leucine zipper motif adjacent to the carboxyl-terminal of the homeodomain structure. This gene is expressed primarily in the cortex of the root and the stem.  Source: TAIR, Jun 30, 2015.
Name  ? homeobox 3
  • synonyms:
  • HAT7,
  • ATHB3,
  • ATHB-3,
  • homeobox 3

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0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI


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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT5G15150 0.5kb upstream 0.5kb upstream 2778   true Chr5: 4913699-4916476
AT5G15150 0.5kb upstream 0.5kb upstream 500   false Chr5: 4915977-4916476
AT5G15150 0.5kb downstream 0.5kb downstream 2778   true Chr5: 4913199-4915976
AT5G15150 0.5kb downstream 0.5kb downstream 500   false Chr5: 4913199-4913698
AT5G15150 1.0kb upstream 1.0kb upstream 3278   true Chr5: 4913699-4916976
AT5G15150 1.0kb upstream 1.0kb upstream 1000   false Chr5: 4915977-4916976
AT5G15150 1.0kb downstream 1.0kb downstream 3278   true Chr5: 4912699-4915976
AT5G15150 1.0kb downstream 1.0kb downstream 1000   false Chr5: 4912699-4913698
AT5G15150 3.0kb upstream 3.0kb upstream 5278   true Chr5: 4913699-4918976
AT5G15150 3.0kb upstream 3.0kb upstream 3000   false Chr5: 4915977-4918976
AT5G15150 3.0kb downstream 3.0kb downstream 5278   true Chr5: 4910699-4915976
AT5G15150 3.0kb downstream 3.0kb downstream 3000   false Chr5: 4910699-4913698


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8 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from TIGR GO annotations assigned by TIGR Arabidopsis annotation effort 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0