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Gene : WOX12 A. thaliana

Gene ID  ? AT5G17810
Brief Description  WUSCHEL related homeobox 12  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? WUSCHEL related homeobox 12 (WOX12); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; CONTAINS InterPro DOMAIN/s: Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057); BEST Arabidopsis thaliana protein match is: WUSCHEL related homeobox 11 (TAIR:AT3G03660.2).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? Encodes a WUSCHEL-related homeobox gene family member with 65 amino acids in its homeodomain. Proteins in this family contain a sequence of eight residues (TLPLFPMH) downstream of the homeodomain called the WUS box.  Source: TAIR, Jun 30, 2015.
Name  ? WUSCHEL related homeobox 12

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1 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Annotation PubMed Id
WOX11 directly responds to a wounding-induced auxin maximum in and surrounding the procambium and acts redundantly with its homolog WOX12 to upregulate LATERAL ORGAN BOUNDARIES DOMAIN16 (LBD16) and LBD29 24642937

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT5G17810 0.5kb upstream 0.5kb upstream 4847   true Chr5: 5880424-5885270
AT5G17810 0.5kb upstream 0.5kb upstream 500   false Chr5: 5884771-5885270
AT5G17810 0.5kb downstream 0.5kb downstream 4847   true Chr5: 5879924-5884770
AT5G17810 0.5kb downstream 0.5kb downstream 500   false Chr5: 5879924-5880423
AT5G17810 1.0kb upstream 1.0kb upstream 5347   true Chr5: 5880424-5885770
AT5G17810 1.0kb upstream 1.0kb upstream 1000   false Chr5: 5884771-5885770
AT5G17810 1.0kb downstream 1.0kb downstream 5347   true Chr5: 5879424-5884770
AT5G17810 1.0kb downstream 1.0kb downstream 1000   false Chr5: 5879424-5880423
AT5G17810 3.0kb upstream 3.0kb upstream 7347   true Chr5: 5880424-5887770
AT5G17810 3.0kb upstream 3.0kb upstream 3000   false Chr5: 5884771-5887770
AT5G17810 3.0kb downstream 3.0kb downstream 7347   true Chr5: 5877424-5884770
AT5G17810 3.0kb downstream 3.0kb downstream 3000   false Chr5: 5877424-5880423

Proteins

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0 Pathways

Data Source: KEGG

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Expression

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Homology

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10 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from UniProt GO annotations assigned by UniProt 8/01/2016
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
GeneRIF Concise phrase describing gene function and publication associated with NCBI Gene records 8/12/2016
IntAct interactions data set Curated binary and complex protein-protein interactions for Arabidopsis thaliana 8/02/2016
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139