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Gene : MEF18 A. thaliana

Gene ID  ? AT5G19020
Brief Description  mitochondrial editing factor 18  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? mitochondrial editing factor 18 (MEF18); CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT2G22070.1).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? Encodes a pentatricopeptide repeat protein (PPR) protein involved in mitochondrial mRNA editing.  Source: TAIR, Jun 30, 2015.
Name  ? mitochondrial editing factor 18

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0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT5G19020 0.5kb upstream 0.5kb upstream 2866   true Chr5: 6352591-6355456
AT5G19020 0.5kb upstream 0.5kb upstream 500   false Chr5: 6354957-6355456
AT5G19020 0.5kb downstream 0.5kb downstream 2866   true Chr5: 6352091-6354956
AT5G19020 0.5kb downstream 0.5kb downstream 500   false Chr5: 6352091-6352590
AT5G19020 1.0kb upstream 1.0kb upstream 3366   true Chr5: 6352591-6355956
AT5G19020 1.0kb upstream 1.0kb upstream 1000   false Chr5: 6354957-6355956
AT5G19020 1.0kb downstream 1.0kb downstream 3366   true Chr5: 6351591-6354956
AT5G19020 1.0kb downstream 1.0kb downstream 1000   false Chr5: 6351591-6352590
AT5G19020 3.0kb upstream 3.0kb upstream 5366   true Chr5: 6352591-6357956
AT5G19020 3.0kb upstream 3.0kb upstream 3000   false Chr5: 6354957-6357956
AT5G19020 3.0kb downstream 3.0kb downstream 5366   true Chr5: 6349591-6354956
AT5G19020 3.0kb downstream 3.0kb downstream 3000   false Chr5: 6349591-6352590

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0 Pathways

Data Source: KEGG

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8 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from TAIR GO annotations assigned by TAIR 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0