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Gene : PI A. thaliana

Gene ID  ? AT5G20240
Brief Description  K-box region and MADS-box transcription factor family protein  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? PISTILLATA (PI); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: K-box region and MADS-box transcription factor family protein (TAIR:AT5G23260.1).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? Floral homeotic gene encoding a MADS domain transcription factor. Required for the specification of petal and stamen identities.  Source: TAIR, Jun 30, 2015.

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4 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Annotation PubMed Id
C-terminal PI motif not essential for floral organ identity function 17965182
BNQ genes Are negatively regulated by AP3 and PI in petals. 20305124
These results imply considerable changes in the composition and topology of the gene network controlled by AP3/PI during the course of flower development. 22847437
Data indicate that C function regulator AGAMOUS and the B function regulators APETALA3 and PISTILLATA control many developmental processes in conjunction, as well as independent activities. 23821642


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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT5G20240 0.5kb upstream 0.5kb upstream 3112   true Chr5: 6828404-6831515
AT5G20240 0.5kb upstream 0.5kb upstream 500   false Chr5: 6828404-6828903
AT5G20240 0.5kb downstream 0.5kb downstream 3112   true Chr5: 6828904-6832015
AT5G20240 0.5kb downstream 0.5kb downstream 500   false Chr5: 6831516-6832015
AT5G20240 1.0kb upstream 1.0kb upstream 3612   true Chr5: 6827904-6831515
AT5G20240 1.0kb upstream 1.0kb upstream 1000   false Chr5: 6827904-6828903
AT5G20240 1.0kb downstream 1.0kb downstream 3612   true Chr5: 6828904-6832515
AT5G20240 1.0kb downstream 1.0kb downstream 1000   false Chr5: 6831516-6832515
AT5G20240 3.0kb upstream 3.0kb upstream 5612   true Chr5: 6825904-6831515
AT5G20240 3.0kb upstream 3.0kb upstream 3000   false Chr5: 6825904-6828903
AT5G20240 3.0kb downstream 3.0kb downstream 5612   true Chr5: 6828904-6834515
AT5G20240 3.0kb downstream 3.0kb downstream 3000   false Chr5: 6831516-6834515


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0 Pathways

Data Source: KEGG

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11 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from TIGR GO annotations assigned by TIGR Arabidopsis annotation effort 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
GeneRIF Concise phrase describing gene function and publication associated with NCBI Gene records 8/12/2016
IntAct interactions data set Curated binary and complex protein-protein interactions for Arabidopsis thaliana 8/02/2016
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139