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Gene : AT5G22400 A. thaliana

Gene ID  ? AT5G22400
Brief Description  Rho GTPase activating protein with PAK-box/P21-Rho-binding domain-containing protein  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? Rho GTPase activating protein with PAK-box/P21-Rho-binding domain; FUNCTIONS IN: Rac GTPase activator activity; INVOLVED IN: signal transduction; LOCATED IN: intracellular, chloroplast; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: PAK-box/P21-Rho-binding (InterPro:IPR000095), Rho GTPase activation protein (InterPro:IPR008936), RhoGAP (InterPro:IPR000198); BEST Arabidopsis thaliana protein match is: rac GTPase activating protein (TAIR:AT3G11490.1).  Source: TAIR, Jun 30, 2015.

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1 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Annotation PubMed Id
Arabidopsis Atropgap1 and Atropgap4 knockout mutants display enhanced susceptibility to the powdery mildew fungus Erysiphe cruciferarum. [ROPGAP1] 22067988

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT5G22400 0.5kb upstream 0.5kb upstream 3405   true Chr5: 7422670-7426074
AT5G22400 0.5kb upstream 0.5kb upstream 500   false Chr5: 7425575-7426074
AT5G22400 0.5kb downstream 0.5kb downstream 3405   true Chr5: 7422170-7425574
AT5G22400 0.5kb downstream 0.5kb downstream 500   false Chr5: 7422170-7422669
AT5G22400 1.0kb upstream 1.0kb upstream 3905   true Chr5: 7422670-7426574
AT5G22400 1.0kb upstream 1.0kb upstream 1000   false Chr5: 7425575-7426574
AT5G22400 1.0kb downstream 1.0kb downstream 3905   true Chr5: 7421670-7425574
AT5G22400 1.0kb downstream 1.0kb downstream 1000   false Chr5: 7421670-7422669
AT5G22400 3.0kb upstream 3.0kb upstream 5905   true Chr5: 7422670-7428574
AT5G22400 3.0kb upstream 3.0kb upstream 3000   false Chr5: 7425575-7428574
AT5G22400 3.0kb downstream 3.0kb downstream 5905   true Chr5: 7419670-7425574
AT5G22400 3.0kb downstream 3.0kb downstream 3000   false Chr5: 7419670-7422669

Proteins

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0 Pathways

Data Source: KEGG

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Expression

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Array Expression

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Interactions

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Homology

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10 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from UniProt GO annotations assigned by UniProt 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
GeneRIF Concise phrase describing gene function and publication associated with NCBI Gene records 8/12/2016
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139