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Gene : RER1 A. thaliana

Gene ID  ? AT5G22790
Brief Description  reticulata-related 1  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? reticulata-related 1 (RER1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, plastid, chloroplast inner membrane, chloroplast envelope; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3411 (InterPro:IPR021825); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF3411) (TAIR:AT2G37860.3).  Source: TAIR, Jun 30, 2015.
Name  ? reticulata-related 1

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1 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Annotation PubMed Id
RER1 gene is mainly expressed in the bundle sheath cells of expanded leaves. 23596191


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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT5G22790 0.5kb upstream 0.5kb upstream 3942   true Chr5: 7599081-7603022
AT5G22790 0.5kb upstream 0.5kb upstream 500   false Chr5: 7602523-7603022
AT5G22790 0.5kb downstream 0.5kb downstream 3942   true Chr5: 7598581-7602522
AT5G22790 0.5kb downstream 0.5kb downstream 500   false Chr5: 7598581-7599080
AT5G22790 1.0kb upstream 1.0kb upstream 4442   true Chr5: 7599081-7603522
AT5G22790 1.0kb upstream 1.0kb upstream 1000   false Chr5: 7602523-7603522
AT5G22790 1.0kb downstream 1.0kb downstream 4442   true Chr5: 7598081-7602522
AT5G22790 1.0kb downstream 1.0kb downstream 1000   false Chr5: 7598081-7599080
AT5G22790 3.0kb upstream 3.0kb upstream 6442   true Chr5: 7599081-7605522
AT5G22790 3.0kb upstream 3.0kb upstream 3000   false Chr5: 7602523-7605522
AT5G22790 3.0kb downstream 3.0kb downstream 6442   true Chr5: 7596081-7602522
AT5G22790 3.0kb downstream 3.0kb downstream 3000   false Chr5: 7596081-7599080


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0 Pathways

Data Source: KEGG

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10 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from TIGR GO annotations assigned by TIGR Arabidopsis annotation effort 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
GeneRIF Concise phrase describing gene function and publication associated with NCBI Gene records 8/12/2016
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139