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Gene : RUP2 A. thaliana

Gene ID  ? AT5G23730
Brief Description  Transducin/WD40 repeat-like superfamily protein  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? Transducin/WD40 repeat-like superfamily protein; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT5G52250.1).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? Encodes REPRESSOR OF UV-B PHOTOMORPHOGENESIS 2 (RUP2). Functions as a repressor of UV-B signaling.  Source: TAIR, Jun 30, 2015.
Name  ? REPRESSOR OF UV-B PHOTOMORPHOGENESIS 2
  • synonyms:
  • EARLY FLOWERING BY OVEREXPRESSION 2,
  • EFO2

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1 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Annotation PubMed Id
EFO1(At5g52250) and EFO2(At5g23730) have overlapping and distinct roles in vegetative development and flowering. 21242318

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT5G23730 0.5kb upstream 0.5kb upstream 2034   true Chr5: 8004597-8006630
AT5G23730 0.5kb upstream 0.5kb upstream 500   false Chr5: 8004597-8005096
AT5G23730 0.5kb downstream 0.5kb downstream 2034   true Chr5: 8005097-8007130
AT5G23730 0.5kb downstream 0.5kb downstream 500   false Chr5: 8006631-8007130
AT5G23730 1.0kb upstream 1.0kb upstream 2534   true Chr5: 8004097-8006630
AT5G23730 1.0kb upstream 1.0kb upstream 1000   false Chr5: 8004097-8005096
AT5G23730 1.0kb downstream 1.0kb downstream 2534   true Chr5: 8005097-8007630
AT5G23730 1.0kb downstream 1.0kb downstream 1000   false Chr5: 8006631-8007630
AT5G23730 3.0kb upstream 3.0kb upstream 4534   true Chr5: 8002097-8006630
AT5G23730 3.0kb upstream 3.0kb upstream 3000   false Chr5: 8002097-8005096
AT5G23730 3.0kb downstream 3.0kb downstream 4534   true Chr5: 8005097-8009630
AT5G23730 3.0kb downstream 3.0kb downstream 3000   false Chr5: 8006631-8009630

Proteins

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Function

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2 Pathways

Data Source: KEGG

Identifier Name
04712 Circadian rhythm - plant
04120 Ubiquitin mediated proteolysis

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Expression

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10 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from TIGR GO annotations assigned by TIGR Arabidopsis annotation effort 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
KEGG pathways data set Wiring diagrams of molecular interactions, reactions, and relations 79.0
GeneRIF Concise phrase describing gene function and publication associated with NCBI Gene records 8/12/2016
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139