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Gene : CYCA2;1 A. thaliana

Gene ID  ? AT5G25380
Brief Description  cyclin a2;1  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? cyclin a2;1 (CYCA2;1); FUNCTIONS IN: cyclin-dependent protein kinase regulator activity; INVOLVED IN: regulation of cell cycle, DNA endoreduplication; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: G2/mitotic-specific cyclin A (InterPro:IPR015453), Cyclin, C-terminal (InterPro:IPR004367), Cyclin-like (InterPro:IPR011028), Cyclin-related (InterPro:IPR013763), Cyclin, N-terminal (InterPro:IPR006671), Cyclin, A/B/D/E (InterPro:IPR014400), Cyclin (InterPro:IPR006670); BEST Arabidopsis thaliana protein match is: mitotic-like cyclin 3B from Arabidopsis (TAIR:AT5G11300.1).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? core cell cycle genes  Source: TAIR, Jun 30, 2015.
Name  ? cyclin a2;1

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2 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Annotation PubMed Id
We show that stage-specific expression of CYCA2;1 and CYCA2;4 in vein development depends on regulatory elements containing, respectively, one and three evolutionarily conserved transcription-factor binding sites 22842098
SAMBA regulates cell proliferation during early development by targeting CYCLIN A2 for APC/C-mediated proteolysis 22869741


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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT5G25380 0.5kb upstream 0.5kb upstream 3871   true Chr5: 8814017-8817887
AT5G25380 0.5kb upstream 0.5kb upstream 500   false Chr5: 8814017-8814516
AT5G25380 0.5kb downstream 0.5kb downstream 3871   true Chr5: 8814517-8818387
AT5G25380 0.5kb downstream 0.5kb downstream 500   false Chr5: 8817888-8818387
AT5G25380 1.0kb upstream 1.0kb upstream 4371   true Chr5: 8813517-8817887
AT5G25380 1.0kb upstream 1.0kb upstream 1000   false Chr5: 8813517-8814516
AT5G25380 1.0kb downstream 1.0kb downstream 4371   true Chr5: 8814517-8818887
AT5G25380 1.0kb downstream 1.0kb downstream 1000   false Chr5: 8817888-8818887
AT5G25380 3.0kb upstream 3.0kb upstream 6371   true Chr5: 8811517-8817887
AT5G25380 3.0kb upstream 3.0kb upstream 3000   false Chr5: 8811517-8814516
AT5G25380 3.0kb downstream 3.0kb downstream 6371   true Chr5: 8814517-8820887
AT5G25380 3.0kb downstream 3.0kb downstream 3000   false Chr5: 8817888-8820887


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0 Pathways

Data Source: KEGG

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11 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from TAIR GO annotations assigned by TAIR 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
GeneRIF Concise phrase describing gene function and publication associated with NCBI Gene records 8/12/2016
IntAct interactions data set Curated binary and complex protein-protein interactions for Arabidopsis thaliana 8/02/2016
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139