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Gene : AT5G26250 A. thaliana

Gene ID  ? AT5G26250
Brief Description  Major facilitator superfamily protein  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? Major facilitator superfamily protein; FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: endomembrane system, integral to membrane, membrane; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), Major facilitator superfamily (InterPro:IPR020846), General substrate transporter (InterPro:IPR005828), Sugar/inositol transporter (InterPro:IPR003663), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: sugar transporter 6 (TAIR:AT3G05960.1).  Source: TAIR, Jun 30, 2015.

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0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT5G26250 0.5kb upstream 0.5kb upstream 2544   true Chr5: 9196258-9198801
AT5G26250 0.5kb upstream 0.5kb upstream 500   false Chr5: 9196258-9196757
AT5G26250 0.5kb downstream 0.5kb downstream 2544   true Chr5: 9196758-9199301
AT5G26250 0.5kb downstream 0.5kb downstream 500   false Chr5: 9198802-9199301
AT5G26250 1.0kb upstream 1.0kb upstream 3044   true Chr5: 9195758-9198801
AT5G26250 1.0kb upstream 1.0kb upstream 1000   false Chr5: 9195758-9196757
AT5G26250 1.0kb downstream 1.0kb downstream 3044   true Chr5: 9196758-9199801
AT5G26250 1.0kb downstream 1.0kb downstream 1000   false Chr5: 9198802-9199801
AT5G26250 3.0kb upstream 3.0kb upstream 5044   true Chr5: 9193758-9198801
AT5G26250 3.0kb upstream 3.0kb upstream 3000   false Chr5: 9193758-9196757
AT5G26250 3.0kb downstream 3.0kb downstream 5044   true Chr5: 9196758-9201801
AT5G26250 3.0kb downstream 3.0kb downstream 3000   false Chr5: 9198802-9201801

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0 Pathways

Data Source: KEGG

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8 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from TIGR GO annotations assigned by TIGR Arabidopsis annotation effort 8/01/2016
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139