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Gene : AT5G26680 A. thaliana

Gene ID  ? AT5G26680
Brief Description  5'-3' exonuclease family protein  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? 5'-3' exonuclease family protein; FUNCTIONS IN: 5'-3' exonuclease activity, DNA binding, catalytic activity, nuclease activity; INVOLVED IN: DNA repair; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: XPG conserved site (InterPro:IPR019974), XPG N-terminal (InterPro:IPR006085), DNA repair protein (XPGC)/yeast Rad (InterPro:IPR006084), 5'-3' exonuclease, C-terminal subdomain (InterPro:IPR020045), 5'-3' exonuclease, N-terminal (InterPro:IPR002421), Helix-hairpin-helix motif, class 2 (InterPro:IPR008918), XPG/RAD2 endonuclease (InterPro:IPR006086); BEST Arabidopsis thaliana protein match is: 5'-3' exonuclease family protein (TAIR:AT1G29630.2).  Source: TAIR, Jun 30, 2015.

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1 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Annotation PubMed Id
Data show that shade avoidance 6 (SAV6; At5g26680), encodes flap endonuclease-1 (FEN1), assures proper root development through maintenance of genome integrity. 26721386


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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT5G26680 0.5kb upstream 0.5kb upstream 4605   true Chr5: 9311446-9316050
AT5G26680 0.5kb upstream 0.5kb upstream 500   false Chr5: 9315551-9316050
AT5G26680 0.5kb downstream 0.5kb downstream 4605   true Chr5: 9310946-9315550
AT5G26680 0.5kb downstream 0.5kb downstream 500   false Chr5: 9310946-9311445
AT5G26680 1.0kb upstream 1.0kb upstream 5105   true Chr5: 9311446-9316550
AT5G26680 1.0kb upstream 1.0kb upstream 1000   false Chr5: 9315551-9316550
AT5G26680 1.0kb downstream 1.0kb downstream 5105   true Chr5: 9310446-9315550
AT5G26680 1.0kb downstream 1.0kb downstream 1000   false Chr5: 9310446-9311445
AT5G26680 3.0kb upstream 3.0kb upstream 7105   true Chr5: 9311446-9318550
AT5G26680 3.0kb upstream 3.0kb upstream 3000   false Chr5: 9315551-9318550
AT5G26680 3.0kb downstream 3.0kb downstream 7105   true Chr5: 9308446-9315550
AT5G26680 3.0kb downstream 3.0kb downstream 3000   false Chr5: 9308446-9311445


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3 Pathways

Data Source: KEGG

Identifier Name
03030 DNA replication
03410 Base excision repair
03450 Non-homologous end-joining

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10 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from UniProt GO annotations assigned by UniProt 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
KEGG pathways data set Wiring diagrams of molecular interactions, reactions, and relations 79.0
GeneRIF Concise phrase describing gene function and publication associated with NCBI Gene records 8/12/2016