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Gene : SK 11 A. thaliana

Gene ID  ? AT5G26751
Brief Description  shaggy-related kinase 11  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? shaggy-related kinase 11 (SK 11); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity; INVOLVED IN: meristem structural organization, phosphorylation; LOCATED IN: cytosol; EXPRESSED IN: inflorescence meristem, whole plant, cultured cell; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT3G05840.1).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? encodes a SHAGGY-related kinase involved in meristem organization. It regulates the redox stress response by phosphorylating glucose-6-phosphate dehydrogenase 6.  Source: TAIR, Jun 30, 2015.
Name  ? shaggy-related kinase 11
  • synonyms:
  • ARABIDOPSIS THALIANA SHAGGY-RELATED KINASE 11,
  • ATSK11,
  • Arabidopsis GSK alpha,
  • ASKalpha

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2 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Annotation PubMed Id
In vivo co-immunoprecipitation with ZTL into an SCF complex. 15447654
ASKalpha is activated by high salinity stress, and phosphorylates and activates G6PD6. 22885737

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT5G26751 0.5kb upstream 0.5kb upstream 3600   true Chr5: 9399377-9402976
AT5G26751 0.5kb upstream 0.5kb upstream 500   false Chr5: 9402477-9402976
AT5G26751 0.5kb downstream 0.5kb downstream 3600   true Chr5: 9398877-9402476
AT5G26751 0.5kb downstream 0.5kb downstream 500   false Chr5: 9398877-9399376
AT5G26751 1.0kb upstream 1.0kb upstream 4100   true Chr5: 9399377-9403476
AT5G26751 1.0kb upstream 1.0kb upstream 1000   false Chr5: 9402477-9403476
AT5G26751 1.0kb downstream 1.0kb downstream 4100   true Chr5: 9398377-9402476
AT5G26751 1.0kb downstream 1.0kb downstream 1000   false Chr5: 9398377-9399376
AT5G26751 3.0kb upstream 3.0kb upstream 6100   true Chr5: 9399377-9405476
AT5G26751 3.0kb upstream 3.0kb upstream 3000   false Chr5: 9402477-9405476
AT5G26751 3.0kb downstream 3.0kb downstream 6100   true Chr5: 9396377-9402476
AT5G26751 3.0kb downstream 3.0kb downstream 3000   false Chr5: 9396377-9399376

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0 Pathways

Data Source: KEGG

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Expression

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11 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from TIGR GO annotations assigned by TIGR Arabidopsis annotation effort 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
GeneRIF Concise phrase describing gene function and publication associated with NCBI Gene records 8/12/2016
IntAct interactions data set Curated binary and complex protein-protein interactions for Arabidopsis thaliana 8/02/2016
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139