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Gene : AT5G35430 A. thaliana

Gene ID  ? AT5G35430
Brief Description  Tetratricopeptide repeat (TPR)-like superfamily protein  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734).  Source: TAIR, Jun 30, 2015.

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0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT5G35430 0.5kb upstream 0.5kb upstream 4648   true Chr5: 13661423-13666070
AT5G35430 0.5kb upstream 0.5kb upstream 500   false Chr5: 13661423-13661922
AT5G35430 0.5kb downstream 0.5kb downstream 4648   true Chr5: 13661923-13666570
AT5G35430 0.5kb downstream 0.5kb downstream 500   false Chr5: 13666071-13666570
AT5G35430 1.0kb upstream 1.0kb upstream 5148   true Chr5: 13660923-13666070
AT5G35430 1.0kb upstream 1.0kb upstream 1000   false Chr5: 13660923-13661922
AT5G35430 1.0kb downstream 1.0kb downstream 5148   true Chr5: 13661923-13667070
AT5G35430 1.0kb downstream 1.0kb downstream 1000   false Chr5: 13666071-13667070
AT5G35430 3.0kb upstream 3.0kb upstream 7148   true Chr5: 13658923-13666070
AT5G35430 3.0kb upstream 3.0kb upstream 3000   false Chr5: 13658923-13661922
AT5G35430 3.0kb downstream 3.0kb downstream 7148   true Chr5: 13661923-13669070
AT5G35430 3.0kb downstream 3.0kb downstream 3000   false Chr5: 13666071-13669070

Proteins

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Function

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1 Pathways

Data Source: KEGG

Identifier Name
03018 RNA degradation

Gene --> Ontology term

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Expression

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10 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from TAIR GO annotations assigned by TAIR 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
TrEMBL data set Computationally analysed records, enriched with automatic annotation 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
KEGG pathways data set Wiring diagrams of molecular interactions, reactions, and relations 79.0
IntAct interactions data set Curated binary and complex protein-protein interactions for Arabidopsis thaliana 8/02/2016