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Gene : ASF1B A. thaliana

Gene ID  ? AT5G38110
Brief Description  anti- silencing function 1b  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? anti- silencing function 1b (ASF1B); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: DNA mediated transformation, nucleobase, nucleoside, nucleotide and nucleic acid metabolic process; LOCATED IN: nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Histone chaperone, ASF1-like (InterPro:IPR006818); BEST Arabidopsis thaliana protein match is: ASF1 like histone chaperone (TAIR:AT1G66740.1).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? This gene is predicted to encode a silencing group A protein. Plant lines expressing RNAi constructs directed against SGA1 have reduced levels of agrobacterium-mediated root transformation. Its expression is regulated during cell cycle progression through E2F transcription factors.  Source: TAIR, Jun 30, 2015.
Name  ? anti- silencing function 1b
  • synonyms:
  • SGA1,
  • SGA01

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3 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Annotation PubMed Id
AtASF1A and AtASF1B proteins bind the histone H3. Simultaneous knockdown impairs chromatin replication and perturbs genome stability and function, causing S-phase and DNA repair checkpoint activation, and abnormal plant growth and development. 21251110
ASF1A and ASF1B are regulated by cell cycle progression and are involved in DNA repair after UV-B irradiation. 23596192
This study unravels an important function of AtASF1A/B in plant heat stress response. 24548003

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT5G38110 0.5kb upstream 0.5kb upstream 2478   true Chr5: 15207858-15210335
AT5G38110 0.5kb upstream 0.5kb upstream 500   false Chr5: 15207858-15208357
AT5G38110 0.5kb downstream 0.5kb downstream 2478   true Chr5: 15208358-15210835
AT5G38110 0.5kb downstream 0.5kb downstream 500   false Chr5: 15210336-15210835
AT5G38110 1.0kb upstream 1.0kb upstream 2978   true Chr5: 15207358-15210335
AT5G38110 1.0kb upstream 1.0kb upstream 1000   false Chr5: 15207358-15208357
AT5G38110 1.0kb downstream 1.0kb downstream 2978   true Chr5: 15208358-15211335
AT5G38110 1.0kb downstream 1.0kb downstream 1000   false Chr5: 15210336-15211335
AT5G38110 3.0kb upstream 3.0kb upstream 4978   true Chr5: 15205358-15210335
AT5G38110 3.0kb upstream 3.0kb upstream 3000   false Chr5: 15205358-15208357
AT5G38110 3.0kb downstream 3.0kb downstream 4978   true Chr5: 15208358-15213335
AT5G38110 3.0kb downstream 3.0kb downstream 3000   false Chr5: 15210336-15213335

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0 Pathways

Data Source: KEGG

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11 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from TAIR GO annotations assigned by TAIR 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
GeneRIF Concise phrase describing gene function and publication associated with NCBI Gene records 8/12/2016
IntAct interactions data set Curated binary and complex protein-protein interactions for Arabidopsis thaliana 8/02/2016
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139