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Gene : RBCS3B A. thaliana

Gene ID  ? AT5G38410
Brief Description  Ribulose bisphosphate carboxylase (small chain) family protein  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? Ribulose bisphosphate carboxylase (small chain) family protein; FUNCTIONS IN: ribulose-bisphosphate carboxylase activity; INVOLVED IN: carbon fixation, response to blue light, response to red light, response to far red light; LOCATED IN: in 8 components; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Ribulose bisphosphate carboxylase, small chain (InterPro:IPR000894); BEST Arabidopsis thaliana protein match is: Ribulose bisphosphate carboxylase (small chain) family protein (TAIR:AT5G38430.1).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? Encodes a member of the Rubisco small subunit (RBCS) multigene family: RBCS1A (At1g67090), RBCS1B (At5g38430), RBCS2B (At5g38420), and RBCS3B (At5g38410). Functions to yield sufficient Rubisco content for leaf photosynthetic capacity.  Source: TAIR, Jun 30, 2015.
Name  ? Rubisco small subunit 3B

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1 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Annotation PubMed Id
RBCS1A and RBCS3B contribute to accumulation of Rubisco in Arabidopsis leaves and that these genes work additively to yield sufficient Rubisco for photosynthetic capacity. 22223809

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT5G38410 0.5kb upstream 0.5kb upstream 2155   true Chr5: 15376988-15379142
AT5G38410 0.5kb upstream 0.5kb upstream 500   false Chr5: 15378643-15379142
AT5G38410 0.5kb downstream 0.5kb downstream 2155   true Chr5: 15376488-15378642
AT5G38410 0.5kb downstream 0.5kb downstream 500   false Chr5: 15376488-15376987
AT5G38410 1.0kb upstream 1.0kb upstream 2655   true Chr5: 15376988-15379642
AT5G38410 1.0kb upstream 1.0kb upstream 1000   false Chr5: 15378643-15379642
AT5G38410 1.0kb downstream 1.0kb downstream 2655   true Chr5: 15375988-15378642
AT5G38410 1.0kb downstream 1.0kb downstream 1000   false Chr5: 15375988-15376987
AT5G38410 3.0kb upstream 3.0kb upstream 4655   true Chr5: 15376988-15381642
AT5G38410 3.0kb upstream 3.0kb upstream 3000   false Chr5: 15378643-15381642
AT5G38410 3.0kb downstream 3.0kb downstream 4655   true Chr5: 15373988-15378642
AT5G38410 3.0kb downstream 3.0kb downstream 3000   false Chr5: 15373988-15376987

Proteins

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Function

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4 Pathways

Data Source: KEGG

Identifier Name
01100 Metabolic pathways
01200 Carbon metabolism
00710 Carbon fixation in photosynthetic organisms
00630 Glyoxylate and dicarboxylate metabolism

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Expression

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Interactions

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12 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from UniProt GO annotations assigned by UniProt 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
KEGG pathways data set Wiring diagrams of molecular interactions, reactions, and relations 79.0
GeneRIF Concise phrase describing gene function and publication associated with NCBI Gene records 8/12/2016
IntAct interactions data set Curated binary and complex protein-protein interactions for Arabidopsis thaliana 8/02/2016
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139