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Gene : AT5G40410 A. thaliana

Gene ID  ? AT5G40410
Brief Description  Tetratricopeptide repeat (TPR)-like superfamily protein  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT1G11290.1).  Source: TAIR, Jun 30, 2015.

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0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT5G40410 0.5kb upstream 0.5kb upstream 2481   true Chr5: 16170874-16173354
AT5G40410 0.5kb upstream 0.5kb upstream 500   false Chr5: 16170874-16171373
AT5G40410 0.5kb downstream 0.5kb downstream 2481   true Chr5: 16171374-16173854
AT5G40410 0.5kb downstream 0.5kb downstream 500   false Chr5: 16173355-16173854
AT5G40410 1.0kb upstream 1.0kb upstream 2981   true Chr5: 16170374-16173354
AT5G40410 1.0kb upstream 1.0kb upstream 1000   false Chr5: 16170374-16171373
AT5G40410 1.0kb downstream 1.0kb downstream 2981   true Chr5: 16171374-16174354
AT5G40410 1.0kb downstream 1.0kb downstream 1000   false Chr5: 16173355-16174354
AT5G40410 3.0kb upstream 3.0kb upstream 4981   true Chr5: 16168374-16173354
AT5G40410 3.0kb upstream 3.0kb upstream 3000   false Chr5: 16168374-16171373
AT5G40410 3.0kb downstream 3.0kb downstream 4981   true Chr5: 16171374-16176354
AT5G40410 3.0kb downstream 3.0kb downstream 3000   false Chr5: 16173355-16176354

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0 Pathways

Data Source: KEGG

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7 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from UniProt GO annotations assigned by UniProt 8/01/2016
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0